Hb_000340_130

Information

Type -
Description -
Location Contig340: 140075-144521
Sequence    

Annotation

kegg
ID rcu:RCOM_0648420
description exonuclease, putative
nr
ID XP_012092294.1
description PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
swissprot
ID Q4IEV5
description RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
trembl
ID A0A067JNA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21971 PE=4 SV=1
Gene Ontology
ID GO:0003676
description exonuclease family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35523: 140174-142949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_130 0.0 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
2 Hb_005975_010 0.0859493488 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
3 Hb_011386_050 0.0887673054 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
4 Hb_005649_100 0.0958171701 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
5 Hb_002686_080 0.0959397915 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
6 Hb_000012_270 0.0968702758 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
7 Hb_000002_120 0.0972110228 - - PREDICTED: uncharacterized protein LOC105782064 [Gossypium raimondii]
8 Hb_000959_220 0.0978666935 - - zinc finger protein, putative [Ricinus communis]
9 Hb_029142_030 0.0988332791 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
10 Hb_065755_030 0.0990221681 - - -
11 Hb_000890_130 0.0991227905 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
12 Hb_002874_180 0.1037259473 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
13 Hb_002498_140 0.1045837019 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
14 Hb_006816_100 0.1056374254 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
15 Hb_077026_010 0.1056499358 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
16 Hb_001517_050 0.1064064625 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
17 Hb_000003_170 0.1066501632 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
18 Hb_002284_210 0.107226988 - - PREDICTED: protein canopy-1 [Jatropha curcas]
19 Hb_002326_110 0.1073050455 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
20 Hb_012340_090 0.1087033707 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000340_130 Hb_000340_130 Hb_005975_010 Hb_005975_010 Hb_000340_130--Hb_005975_010 Hb_011386_050 Hb_011386_050 Hb_000340_130--Hb_011386_050 Hb_005649_100 Hb_005649_100 Hb_000340_130--Hb_005649_100 Hb_002686_080 Hb_002686_080 Hb_000340_130--Hb_002686_080 Hb_000012_270 Hb_000012_270 Hb_000340_130--Hb_000012_270 Hb_000002_120 Hb_000002_120 Hb_000340_130--Hb_000002_120 Hb_029142_030 Hb_029142_030 Hb_005975_010--Hb_029142_030 Hb_003579_050 Hb_003579_050 Hb_005975_010--Hb_003579_050 Hb_005975_010--Hb_000002_120 Hb_000224_150 Hb_000224_150 Hb_005975_010--Hb_000224_150 Hb_065755_030 Hb_065755_030 Hb_005975_010--Hb_065755_030 Hb_004994_080 Hb_004994_080 Hb_011386_050--Hb_004994_080 Hb_002027_320 Hb_002027_320 Hb_011386_050--Hb_002027_320 Hb_006555_040 Hb_006555_040 Hb_011386_050--Hb_006555_040 Hb_007263_010 Hb_007263_010 Hb_011386_050--Hb_007263_010 Hb_000364_100 Hb_000364_100 Hb_011386_050--Hb_000364_100 Hb_002326_110 Hb_002326_110 Hb_005649_100--Hb_002326_110 Hb_002909_040 Hb_002909_040 Hb_005649_100--Hb_002909_040 Hb_000940_050 Hb_000940_050 Hb_005649_100--Hb_000940_050 Hb_000207_200 Hb_000207_200 Hb_005649_100--Hb_000207_200 Hb_003228_100 Hb_003228_100 Hb_005649_100--Hb_003228_100 Hb_005649_100--Hb_000012_270 Hb_001053_190 Hb_001053_190 Hb_002686_080--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_002686_080--Hb_003540_050 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_000890_130 Hb_000890_130 Hb_002686_080--Hb_000890_130 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_000012_270--Hb_003228_100 Hb_000959_220 Hb_000959_220 Hb_000012_270--Hb_000959_220 Hb_005731_110 Hb_005731_110 Hb_000012_270--Hb_005731_110 Hb_005162_110 Hb_005162_110 Hb_000012_270--Hb_005162_110 Hb_143766_020 Hb_143766_020 Hb_000012_270--Hb_143766_020 Hb_000002_120--Hb_003579_050 Hb_000371_010 Hb_000371_010 Hb_000002_120--Hb_000371_010 Hb_001662_040 Hb_001662_040 Hb_000002_120--Hb_001662_040 Hb_034243_040 Hb_034243_040 Hb_000002_120--Hb_034243_040 Hb_000098_140 Hb_000098_140 Hb_000002_120--Hb_000098_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72756 2.20906 11.4447 4.24944 3.77699 2.72714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1615 3.12898 2.45479 3.32341 3.90384

CAGE analysis