Hb_000340_140

Information

Type -
Description -
Location Contig340: 146188-155868
Sequence    

Annotation

kegg
ID vvi:100258076
description BTB/POZ and MATH domain-containing protein 2-like
nr
ID XP_010652109.1
description PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
swissprot
ID Q8L765
description BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana GN=BPM1 PE=1 SV=1
trembl
ID D7TPA6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35525: 146239-149525 , PASA_asmbl_35527: 146287-149526 , PASA_asmbl_35530: 147317-147478 , PASA_asmbl_35531: 150738-155721 , PASA_asmbl_35532: 153028-155721
cDNA
(Sanger)
(ID:Location)		 020_P17.ab1: 146289-149526

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_140 0.0 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
2 Hb_001383_060 0.0631378495 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_002963_010 0.0711484323 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
4 Hb_000086_550 0.0739433651 - - Os02g0814700 [Oryza sativa Japonica Group]
5 Hb_000170_010 0.0766536759 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_000283_110 0.0766809436 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
7 Hb_000221_150 0.0766973206 - - -
8 Hb_000317_340 0.0789543372 - - conserved hypothetical protein [Ricinus communis]
9 Hb_148209_080 0.0791070725 - - MED32, putative [Theobroma cacao]
10 Hb_000307_090 0.0793953044 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
11 Hb_001433_050 0.0807874894 - - 60S ribosomal protein L18, putative [Ricinus communis]
12 Hb_011781_030 0.081299928 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
13 Hb_001117_090 0.08243063 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
14 Hb_004032_100 0.0825944795 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
15 Hb_015175_030 0.0829150068 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
16 Hb_159809_020 0.083280823 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_003927_130 0.0833085438 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
18 Hb_000926_300 0.0838561205 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
19 Hb_001080_080 0.0840564374 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
20 Hb_000329_310 0.0852980143 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000340_140 Hb_000340_140 Hb_001383_060 Hb_001383_060 Hb_000340_140--Hb_001383_060 Hb_002963_010 Hb_002963_010 Hb_000340_140--Hb_002963_010 Hb_000086_550 Hb_000086_550 Hb_000340_140--Hb_000086_550 Hb_000170_010 Hb_000170_010 Hb_000340_140--Hb_000170_010 Hb_000283_110 Hb_000283_110 Hb_000340_140--Hb_000283_110 Hb_000221_150 Hb_000221_150 Hb_000340_140--Hb_000221_150 Hb_003927_130 Hb_003927_130 Hb_001383_060--Hb_003927_130 Hb_001433_050 Hb_001433_050 Hb_001383_060--Hb_001433_050 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_007479_020 Hb_007479_020 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_002963_010--Hb_000170_010 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_000170_010--Hb_004837_140 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_003893_050 Hb_003893_050 Hb_000283_110--Hb_003893_050 Hb_002431_050 Hb_002431_050 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_001080_080 Hb_001080_080 Hb_000221_150--Hb_001080_080 Hb_000028_400 Hb_000028_400 Hb_000221_150--Hb_000028_400 Hb_000364_030 Hb_000364_030 Hb_000221_150--Hb_000364_030 Hb_007416_020 Hb_007416_020 Hb_000221_150--Hb_007416_020 Hb_000333_090 Hb_000333_090 Hb_000221_150--Hb_000333_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.8231 27.8735 19.5945 32.9264 47.3111 85.1751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.638 147.782 66.8215 30.825 27.7465

CAGE analysis