Hb_000340_180

Information

Type -
Description -
Location Contig340: 179085-185959
Sequence    

Annotation

kegg
ID rcu:RCOM_0648050
description zinc ion binding protein, putative
nr
ID XP_012092300.1
description PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
swissprot
ID Q5M7X9
description Mitochondrial ubiquitin ligase activator of nfkb 1-A OS=Danio rerio GN=mul1a PE=2 SV=1
trembl
ID A0A067JCH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21978 PE=4 SV=1
Gene Ontology
ID GO:0004842
description mitochondrial ubiquitin ligase activator of nfkb 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35537: 178666-178779 , PASA_asmbl_35538: 178874-185057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_180 0.0 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
2 Hb_003938_090 0.0615413609 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000035_180 0.0634274369 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
4 Hb_001278_100 0.0645847521 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
5 Hb_005496_140 0.0662284484 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000003_230 0.0664111534 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
7 Hb_004058_030 0.067422897 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
8 Hb_000373_070 0.0676133741 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
9 Hb_003304_020 0.0689801113 - - Polyadenylate-binding protein RBP47C [Glycine soja]
10 Hb_002863_050 0.0702128719 - - aldose 1-epimerase, putative [Ricinus communis]
11 Hb_003416_010 0.0708447577 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
12 Hb_024439_010 0.0709773467 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
13 Hb_000288_030 0.0713344455 - - PREDICTED: syntaxin-32 [Jatropha curcas]
14 Hb_008847_030 0.0716786023 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
15 Hb_003582_060 0.0718443661 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_002641_060 0.0725373258 - - prefoldin subunit, putative [Ricinus communis]
17 Hb_000260_350 0.0746233691 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000331_550 0.0746544997 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
19 Hb_004934_100 0.0748432263 - - conserved hypothetical protein [Ricinus communis]
20 Hb_156279_020 0.0750330853 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]

Gene co-expression network

sample Hb_000340_180 Hb_000340_180 Hb_003938_090 Hb_003938_090 Hb_000340_180--Hb_003938_090 Hb_000035_180 Hb_000035_180 Hb_000340_180--Hb_000035_180 Hb_001278_100 Hb_001278_100 Hb_000340_180--Hb_001278_100 Hb_005496_140 Hb_005496_140 Hb_000340_180--Hb_005496_140 Hb_000003_230 Hb_000003_230 Hb_000340_180--Hb_000003_230 Hb_004058_030 Hb_004058_030 Hb_000340_180--Hb_004058_030 Hb_008847_030 Hb_008847_030 Hb_003938_090--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_002641_060 Hb_002641_060 Hb_003938_090--Hb_002641_060 Hb_000146_070 Hb_000146_070 Hb_000035_180--Hb_000146_070 Hb_156279_020 Hb_156279_020 Hb_000035_180--Hb_156279_020 Hb_002078_350 Hb_002078_350 Hb_000035_180--Hb_002078_350 Hb_007479_040 Hb_007479_040 Hb_000035_180--Hb_007479_040 Hb_000331_260 Hb_000331_260 Hb_000035_180--Hb_000331_260 Hb_012022_040 Hb_012022_040 Hb_001278_100--Hb_012022_040 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_000270_310 Hb_000270_310 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_164010_040 Hb_164010_040 Hb_001278_100--Hb_164010_040 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_007676_080 Hb_007676_080 Hb_000003_230--Hb_007676_080 Hb_003304_020 Hb_003304_020 Hb_000003_230--Hb_003304_020 Hb_000003_230--Hb_003582_060 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_000003_230--Hb_004058_030 Hb_004058_030--Hb_003304_020 Hb_002681_100 Hb_002681_100 Hb_004058_030--Hb_002681_100 Hb_004058_030--Hb_006615_240 Hb_004058_030--Hb_003582_060 Hb_000684_380 Hb_000684_380 Hb_004058_030--Hb_000684_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.9177 13.2658 15.1735 16.1609 13.5936 15.6141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6846 24.7958 20.19 12.7873 14.1876

CAGE analysis