Hb_000340_220

Information

Type -
Description -
Location Contig340: 209436-217249
Sequence    

Annotation

kegg
ID rcu:RCOM_0647920
description hypothetical protein
nr
ID XP_002524804.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFN5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0647920 PE=4 SV=1
Gene Ontology
ID GO:0016706
description alpha-ketoglutarate-dependent dioxygenase abh5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35545: 215626-216204 , PASA_asmbl_35546: 216387-217224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000804_020 0.0866849411 - - PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]
3 Hb_003581_130 0.0951033063 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_005588_120 0.0957541263 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004129_010 0.1085800493 - - aspartate aminotransferase, putative [Ricinus communis]
6 Hb_001865_100 0.1106747758 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
7 Hb_000007_410 0.1126101591 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
8 Hb_003226_090 0.1129063815 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
9 Hb_026698_020 0.1211876027 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
10 Hb_000256_160 0.1215069172 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
11 Hb_000015_200 0.121879723 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
12 Hb_001235_130 0.1248440832 - - -
13 Hb_002259_220 0.131687722 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
14 Hb_000066_040 0.13279668 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
15 Hb_002943_010 0.1341266731 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
16 Hb_001514_240 0.1341310847 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
17 Hb_000369_080 0.1341800156 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
18 Hb_132840_030 0.1344103513 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
19 Hb_004680_010 0.1357543409 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
20 Hb_001124_140 0.1374604269 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_220 Hb_000340_220 Hb_000804_020 Hb_000804_020 Hb_000340_220--Hb_000804_020 Hb_003581_130 Hb_003581_130 Hb_000340_220--Hb_003581_130 Hb_005588_120 Hb_005588_120 Hb_000340_220--Hb_005588_120 Hb_004129_010 Hb_004129_010 Hb_000340_220--Hb_004129_010 Hb_001865_100 Hb_001865_100 Hb_000340_220--Hb_001865_100 Hb_000007_410 Hb_000007_410 Hb_000340_220--Hb_000007_410 Hb_007416_110 Hb_007416_110 Hb_000804_020--Hb_007416_110 Hb_003025_030 Hb_003025_030 Hb_000804_020--Hb_003025_030 Hb_001564_070 Hb_001564_070 Hb_000804_020--Hb_001564_070 Hb_000465_150 Hb_000465_150 Hb_000804_020--Hb_000465_150 Hb_009296_020 Hb_009296_020 Hb_000804_020--Hb_009296_020 Hb_000015_200 Hb_000015_200 Hb_003581_130--Hb_000015_200 Hb_000452_030 Hb_000452_030 Hb_003581_130--Hb_000452_030 Hb_000015_090 Hb_000015_090 Hb_003581_130--Hb_000015_090 Hb_002349_030 Hb_002349_030 Hb_003581_130--Hb_002349_030 Hb_000369_080 Hb_000369_080 Hb_003581_130--Hb_000369_080 Hb_005588_120--Hb_004129_010 Hb_000416_060 Hb_000416_060 Hb_005588_120--Hb_000416_060 Hb_132840_030 Hb_132840_030 Hb_005588_120--Hb_132840_030 Hb_000256_160 Hb_000256_160 Hb_005588_120--Hb_000256_160 Hb_001235_130 Hb_001235_130 Hb_005588_120--Hb_001235_130 Hb_001754_050 Hb_001754_050 Hb_004129_010--Hb_001754_050 Hb_007229_050 Hb_007229_050 Hb_004129_010--Hb_007229_050 Hb_004129_010--Hb_000256_160 Hb_000157_140 Hb_000157_140 Hb_004129_010--Hb_000157_140 Hb_003030_010 Hb_003030_010 Hb_004129_010--Hb_003030_010 Hb_004943_040 Hb_004943_040 Hb_001865_100--Hb_004943_040 Hb_004052_110 Hb_004052_110 Hb_001865_100--Hb_004052_110 Hb_003687_130 Hb_003687_130 Hb_001865_100--Hb_003687_130 Hb_000665_200 Hb_000665_200 Hb_001865_100--Hb_000665_200 Hb_000510_190 Hb_000510_190 Hb_001865_100--Hb_000510_190 Hb_002259_220 Hb_002259_220 Hb_001865_100--Hb_002259_220 Hb_004586_090 Hb_004586_090 Hb_000007_410--Hb_004586_090 Hb_000007_410--Hb_000015_200 Hb_000271_120 Hb_000271_120 Hb_000007_410--Hb_000271_120 Hb_000258_090 Hb_000258_090 Hb_000007_410--Hb_000258_090 Hb_003964_110 Hb_003964_110 Hb_000007_410--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_000007_410--Hb_000599_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61942 8.87581 9.33877 10.2193 0.87321 1.32223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.948639 1.36583 4.25741 8.62952 11.2082

CAGE analysis