Hb_000340_250

Information

Type -
Description -
Location Contig340: 223174-224241
Sequence    

Annotation

kegg
ID rcu:RCOM_0647880
description transferase, transferring glycosyl groups, putative
nr
ID XP_012092493.1
description PREDICTED: probable galacturonosyltransferase-like 4 [Jatropha curcas]
swissprot
ID Q9M8J2
description Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1
trembl
ID A0A067JPQ5
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_21985 PE=3 SV=1
Gene Ontology
ID GO:0016757
description probable galacturonosyltransferase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_250 0.0 - - PREDICTED: probable galacturonosyltransferase-like 4 [Jatropha curcas]
2 Hb_000169_060 0.1930526936 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002284_030 0.1960835646 - - PREDICTED: xylem cysteine proteinase 2 [Jatropha curcas]
4 Hb_000836_560 0.2060514475 - - -
5 Hb_004994_190 0.2063401342 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Jatropha curcas]
6 Hb_001556_020 0.2156147919 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
7 Hb_001140_320 0.2235467076 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
8 Hb_001374_040 0.2263163085 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
9 Hb_002518_270 0.2274949995 - - glycogen phosphorylase, putative [Ricinus communis]
10 Hb_000252_080 0.2319009987 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
11 Hb_000027_130 0.2320656767 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
12 Hb_006501_170 0.2355785487 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
13 Hb_001006_280 0.2365599401 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
14 Hb_006970_150 0.2381033204 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
15 Hb_000575_090 0.2397749761 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
16 Hb_000453_280 0.2403329228 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
17 Hb_001195_730 0.2406859964 - - PREDICTED: protein LYK5-like [Jatropha curcas]
18 Hb_000685_130 0.2452032331 - - PREDICTED: uncharacterized protein LOC105351820 [Fragaria vesca subsp. vesca]
19 Hb_011716_050 0.2463799914 - - serine acetyltransferase [Hevea brasiliensis]
20 Hb_000126_040 0.2500836138 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000340_250 Hb_000340_250 Hb_000169_060 Hb_000169_060 Hb_000340_250--Hb_000169_060 Hb_002284_030 Hb_002284_030 Hb_000340_250--Hb_002284_030 Hb_000836_560 Hb_000836_560 Hb_000340_250--Hb_000836_560 Hb_004994_190 Hb_004994_190 Hb_000340_250--Hb_004994_190 Hb_001556_020 Hb_001556_020 Hb_000340_250--Hb_001556_020 Hb_001140_320 Hb_001140_320 Hb_000340_250--Hb_001140_320 Hb_063523_010 Hb_063523_010 Hb_000169_060--Hb_063523_010 Hb_033045_010 Hb_033045_010 Hb_000169_060--Hb_033045_010 Hb_108551_010 Hb_108551_010 Hb_000169_060--Hb_108551_010 Hb_006925_060 Hb_006925_060 Hb_000169_060--Hb_006925_060 Hb_006970_150 Hb_006970_150 Hb_000169_060--Hb_006970_150 Hb_006501_170 Hb_006501_170 Hb_002284_030--Hb_006501_170 Hb_000297_100 Hb_000297_100 Hb_002284_030--Hb_000297_100 Hb_000752_020 Hb_000752_020 Hb_002284_030--Hb_000752_020 Hb_000252_080 Hb_000252_080 Hb_002284_030--Hb_000252_080 Hb_004459_110 Hb_004459_110 Hb_002284_030--Hb_004459_110 Hb_000265_020 Hb_000265_020 Hb_000836_560--Hb_000265_020 Hb_000836_560--Hb_001140_320 Hb_000836_560--Hb_033045_010 Hb_000836_560--Hb_006970_150 Hb_001374_040 Hb_001374_040 Hb_000836_560--Hb_001374_040 Hb_002518_270 Hb_002518_270 Hb_000836_560--Hb_002518_270 Hb_134932_010 Hb_134932_010 Hb_004994_190--Hb_134932_010 Hb_000685_130 Hb_000685_130 Hb_004994_190--Hb_000685_130 Hb_000412_090 Hb_000412_090 Hb_004994_190--Hb_000412_090 Hb_086002_010 Hb_086002_010 Hb_004994_190--Hb_086002_010 Hb_004994_190--Hb_001556_020 Hb_000417_410 Hb_000417_410 Hb_001556_020--Hb_000417_410 Hb_000453_280 Hb_000453_280 Hb_001556_020--Hb_000453_280 Hb_000522_010 Hb_000522_010 Hb_001556_020--Hb_000522_010 Hb_002783_140 Hb_002783_140 Hb_001556_020--Hb_002783_140 Hb_003517_100 Hb_003517_100 Hb_001556_020--Hb_003517_100 Hb_000027_100 Hb_000027_100 Hb_001556_020--Hb_000027_100 Hb_000575_090 Hb_000575_090 Hb_001140_320--Hb_000575_090 Hb_000067_030 Hb_000067_030 Hb_001140_320--Hb_000067_030 Hb_001140_320--Hb_001374_040 Hb_007919_030 Hb_007919_030 Hb_001140_320--Hb_007919_030 Hb_001365_050 Hb_001365_050 Hb_001140_320--Hb_001365_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.282594 0.122191 0.0173037 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0467194 0.0367469 0 0.132796 0.0755151

CAGE analysis