Hb_000340_260

Information

Type -
Description -
Location Contig340: 225366-228466
Sequence    

Annotation

kegg
ID rcu:RCOM_0647760
description Auxin-binding protein T85 precursor, putative (EC:1.3.1.74)
nr
ID XP_002524798.1
description Auxin-binding protein T85 precursor, putative [Ricinus communis]
swissprot
ID P33490
description Auxin-binding protein T85 OS=Nicotiana tabacum GN=T85 PE=3 SV=1
trembl
ID B9SFM9
description Auxin-binding protein T85, putative OS=Ricinus communis GN=RCOM_0647760 PE=4 SV=1
Gene Ontology
ID GO:0004872
description auxin-binding protein t85

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_260 0.0 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
2 Hb_001832_010 0.095190029 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
3 Hb_004724_340 0.0957154735 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
4 Hb_000212_350 0.1033790573 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
5 Hb_000696_340 0.105966131 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
6 Hb_000061_320 0.1074982006 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
7 Hb_117134_010 0.1101672658 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
8 Hb_000754_040 0.1149905574 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
9 Hb_024185_020 0.1155412026 - - -
10 Hb_010080_090 0.1158171828 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
11 Hb_011909_100 0.1159226372 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000668_040 0.1160571818 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
13 Hb_003732_010 0.1166809854 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
14 Hb_001833_110 0.1168823227 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001360_050 0.1169825871 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
16 Hb_015807_040 0.1172443854 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
17 Hb_005432_030 0.1179455316 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
18 Hb_012338_010 0.1182936296 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000010_460 0.1184066268 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
20 Hb_000053_100 0.1189908771 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_260 Hb_000340_260 Hb_001832_010 Hb_001832_010 Hb_000340_260--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_000340_260--Hb_004724_340 Hb_000212_350 Hb_000212_350 Hb_000340_260--Hb_000212_350 Hb_000696_340 Hb_000696_340 Hb_000340_260--Hb_000696_340 Hb_000061_320 Hb_000061_320 Hb_000340_260--Hb_000061_320 Hb_117134_010 Hb_117134_010 Hb_000340_260--Hb_117134_010 Hb_001833_110 Hb_001833_110 Hb_001832_010--Hb_001833_110 Hb_015807_040 Hb_015807_040 Hb_001832_010--Hb_015807_040 Hb_000668_040 Hb_000668_040 Hb_001832_010--Hb_000668_040 Hb_001832_010--Hb_004724_340 Hb_001360_050 Hb_001360_050 Hb_001832_010--Hb_001360_050 Hb_004837_140 Hb_004837_140 Hb_001832_010--Hb_004837_140 Hb_004724_340--Hb_001360_050 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_012675_060 Hb_012675_060 Hb_004724_340--Hb_012675_060 Hb_004724_340--Hb_001833_110 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_002471_080 Hb_002471_080 Hb_004724_340--Hb_002471_080 Hb_000754_040 Hb_000754_040 Hb_000212_350--Hb_000754_040 Hb_002163_020 Hb_002163_020 Hb_000212_350--Hb_002163_020 Hb_001983_020 Hb_001983_020 Hb_000212_350--Hb_001983_020 Hb_005941_040 Hb_005941_040 Hb_000212_350--Hb_005941_040 Hb_164926_030 Hb_164926_030 Hb_000212_350--Hb_164926_030 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_002137_020 Hb_002137_020 Hb_000696_340--Hb_002137_020 Hb_005329_020 Hb_005329_020 Hb_000696_340--Hb_005329_020 Hb_000329_630 Hb_000329_630 Hb_000696_340--Hb_000329_630 Hb_004223_280 Hb_004223_280 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_012338_010 Hb_012338_010 Hb_000061_320--Hb_012338_010 Hb_009954_040 Hb_009954_040 Hb_000061_320--Hb_009954_040 Hb_003175_040 Hb_003175_040 Hb_000061_320--Hb_003175_040 Hb_000300_610 Hb_000300_610 Hb_000061_320--Hb_000300_610 Hb_003020_230 Hb_003020_230 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030 Hb_005398_030 Hb_005398_030 Hb_117134_010--Hb_005398_030 Hb_000496_060 Hb_000496_060 Hb_117134_010--Hb_000496_060 Hb_117134_010--Hb_000061_320 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.7367 4.74922 5.4776 3.81382 11.4078 11.5523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9923 13.665 15.0011 8.00234 8.25459

CAGE analysis