Hb_000340_270

Information

Type transcription factor
Description TF Family: mTERF
Location Contig340: 229235-230835
Sequence    

Annotation

kegg
ID rcu:RCOM_0647750
description hypothetical protein
nr
ID XP_012092310.1
description PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
swissprot
ID Q96E29
description Transcription termination factor 3, mitochondrial OS=Homo sapiens GN=MTERF3 PE=1 SV=2
trembl
ID A0A067JCI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21988 PE=4 SV=1
Gene Ontology
ID GO:0043231
description mitochondrial transcription termination factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35550: 229145-229346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_270 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
2 Hb_010743_010 0.1554394613 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_004837_250 0.1645523239 - - conserved hypothetical protein [Ricinus communis]
4 Hb_137222_010 0.1736997127 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
5 Hb_001409_080 0.1760881453 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Populus euphratica]
6 Hb_176680_010 0.1770770903 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
7 Hb_026437_020 0.1775355974 - - ring finger protein, putative [Ricinus communis]
8 Hb_002235_070 0.1819661606 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
9 Hb_000363_450 0.1833077086 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
10 Hb_000190_230 0.1897089667 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
11 Hb_002243_020 0.1898015529 - - PREDICTED: uncharacterized protein LOC105642097 isoform X1 [Jatropha curcas]
12 Hb_000866_020 0.1904366036 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
13 Hb_002762_050 0.1909930815 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
14 Hb_001384_040 0.1927320991 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
15 Hb_011618_010 0.1928588725 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
16 Hb_012539_080 0.1941071374 - - Polyprotein, putative [Solanum demissum]
17 Hb_023732_080 0.1948830521 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_000445_160 0.1953815246 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
19 Hb_113379_010 0.1955883314 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
20 Hb_005348_120 0.1959127004 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000340_270 Hb_000340_270 Hb_010743_010 Hb_010743_010 Hb_000340_270--Hb_010743_010 Hb_004837_250 Hb_004837_250 Hb_000340_270--Hb_004837_250 Hb_137222_010 Hb_137222_010 Hb_000340_270--Hb_137222_010 Hb_001409_080 Hb_001409_080 Hb_000340_270--Hb_001409_080 Hb_176680_010 Hb_176680_010 Hb_000340_270--Hb_176680_010 Hb_026437_020 Hb_026437_020 Hb_000340_270--Hb_026437_020 Hb_010743_010--Hb_137222_010 Hb_012655_010 Hb_012655_010 Hb_010743_010--Hb_012655_010 Hb_004204_060 Hb_004204_060 Hb_010743_010--Hb_004204_060 Hb_010743_010--Hb_001409_080 Hb_001491_070 Hb_001491_070 Hb_010743_010--Hb_001491_070 Hb_162174_010 Hb_162174_010 Hb_010743_010--Hb_162174_010 Hb_010678_010 Hb_010678_010 Hb_004837_250--Hb_010678_010 Hb_004837_250--Hb_176680_010 Hb_000574_010 Hb_000574_010 Hb_004837_250--Hb_000574_010 Hb_023732_080 Hb_023732_080 Hb_004837_250--Hb_023732_080 Hb_002701_170 Hb_002701_170 Hb_004837_250--Hb_002701_170 Hb_006938_060 Hb_006938_060 Hb_004837_250--Hb_006938_060 Hb_000816_240 Hb_000816_240 Hb_137222_010--Hb_000816_240 Hb_029920_010 Hb_029920_010 Hb_137222_010--Hb_029920_010 Hb_000300_110 Hb_000300_110 Hb_137222_010--Hb_000300_110 Hb_000424_130 Hb_000424_130 Hb_137222_010--Hb_000424_130 Hb_000327_260 Hb_000327_260 Hb_137222_010--Hb_000327_260 Hb_127263_010 Hb_127263_010 Hb_137222_010--Hb_127263_010 Hb_001409_080--Hb_127263_010 Hb_000866_060 Hb_000866_060 Hb_001409_080--Hb_000866_060 Hb_001409_080--Hb_176680_010 Hb_000239_050 Hb_000239_050 Hb_001409_080--Hb_000239_050 Hb_001409_080--Hb_006938_060 Hb_002762_050 Hb_002762_050 Hb_001409_080--Hb_002762_050 Hb_176680_010--Hb_006938_060 Hb_119443_010 Hb_119443_010 Hb_176680_010--Hb_119443_010 Hb_067558_010 Hb_067558_010 Hb_176680_010--Hb_067558_010 Hb_012539_080 Hb_012539_080 Hb_176680_010--Hb_012539_080 Hb_040718_010 Hb_040718_010 Hb_176680_010--Hb_040718_010 Hb_026437_020--Hb_002762_050 Hb_000694_080 Hb_000694_080 Hb_026437_020--Hb_000694_080 Hb_087599_010 Hb_087599_010 Hb_026437_020--Hb_087599_010 Hb_000017_210 Hb_000017_210 Hb_026437_020--Hb_000017_210 Hb_000185_010 Hb_000185_010 Hb_026437_020--Hb_000185_010 Hb_000026_060 Hb_000026_060 Hb_026437_020--Hb_000026_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.250909 0.120138 0.0299351 0.0151709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0535215 0.391011

CAGE analysis