Hb_000340_290

Information

Type -
Description -
Location Contig340: 244613-265393
Sequence    

Annotation

kegg
ID rcu:RCOM_0647730
description hypothetical protein
nr
ID XP_012092312.1
description PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
swissprot
ID F4IN58
description Piezo-type mechanosensitive ion channel homolog OS=Arabidopsis thaliana GN=At2g48040/At2g48050/At2g48060 PE=2 SV=1
trembl
ID B9SFM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0647730 PE=4 SV=1
Gene Ontology
ID GO:0016021
description piezo-type mechanosensitive ion channel homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35552: 246759-247118 , PASA_asmbl_35553: 249822-250150 , PASA_asmbl_35554: 250938-253160 , PASA_asmbl_35555: 253829-256099 , PASA_asmbl_35557: 257003-258512 , PASA_asmbl_35560: 259474-261659 , PASA_asmbl_35561: 259474-261659 , PASA_asmbl_35562: 262426-265334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_290 0.0 - - PREDICTED: piezo-type mechanosensitive ion channel homolog [Jatropha curcas]
2 Hb_007012_040 0.1084385873 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
3 Hb_014006_010 0.1223927031 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
4 Hb_003124_270 0.123499787 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
5 Hb_000805_190 0.1259046586 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
6 Hb_001956_060 0.1270506269 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
7 Hb_000154_130 0.1272028421 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
8 Hb_002235_310 0.1280281891 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
9 Hb_000167_120 0.1288206517 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
10 Hb_000866_110 0.1290896694 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
11 Hb_024714_070 0.1292569729 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
12 Hb_004586_090 0.1306191149 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
13 Hb_003581_130 0.1308668849 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_006816_480 0.1328159205 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
15 Hb_005588_120 0.1354000408 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000015_200 0.1365410157 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
17 Hb_000125_180 0.1366710132 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
18 Hb_000205_250 0.1369440629 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
19 Hb_004696_070 0.1371835667 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
20 Hb_005181_050 0.138197356 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_290 Hb_000340_290 Hb_007012_040 Hb_007012_040 Hb_000340_290--Hb_007012_040 Hb_014006_010 Hb_014006_010 Hb_000340_290--Hb_014006_010 Hb_003124_270 Hb_003124_270 Hb_000340_290--Hb_003124_270 Hb_000805_190 Hb_000805_190 Hb_000340_290--Hb_000805_190 Hb_001956_060 Hb_001956_060 Hb_000340_290--Hb_001956_060 Hb_000154_130 Hb_000154_130 Hb_000340_290--Hb_000154_130 Hb_007012_040--Hb_003124_270 Hb_004884_090 Hb_004884_090 Hb_007012_040--Hb_004884_090 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_007012_040--Hb_000154_130 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_000445_130 Hb_000445_130 Hb_007012_040--Hb_000445_130 Hb_013399_090 Hb_013399_090 Hb_014006_010--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_014006_010--Hb_000340_360 Hb_004586_090 Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000221_180 Hb_000221_180 Hb_014006_010--Hb_000221_180 Hb_014006_010--Hb_000154_130 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_003124_270--Hb_004884_090 Hb_005181_050 Hb_005181_050 Hb_003124_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_000056_280 Hb_000056_280 Hb_000805_190--Hb_000056_280 Hb_000059_130 Hb_000059_130 Hb_000805_190--Hb_000059_130 Hb_000072_020 Hb_000072_020 Hb_000805_190--Hb_000072_020 Hb_002235_310 Hb_002235_310 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_033363_010 Hb_033363_010 Hb_000805_190--Hb_033363_010 Hb_000666_010 Hb_000666_010 Hb_001956_060--Hb_000666_010 Hb_000012_240 Hb_000012_240 Hb_001956_060--Hb_000012_240 Hb_000711_010 Hb_000711_010 Hb_001956_060--Hb_000711_010 Hb_128589_010 Hb_128589_010 Hb_001956_060--Hb_128589_010 Hb_003581_130 Hb_003581_130 Hb_001956_060--Hb_003581_130 Hb_001956_060--Hb_000110_300 Hb_000154_130--Hb_000445_130 Hb_000367_020 Hb_000367_020 Hb_000154_130--Hb_000367_020 Hb_011021_050 Hb_011021_050 Hb_000154_130--Hb_011021_050 Hb_000154_130--Hb_003124_270 Hb_001951_100 Hb_001951_100 Hb_000154_130--Hb_001951_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28931 10.3907 3.51329 5.2507 1.16632 0.691096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54374 2.20064 2.75245 6.69709 8.06427

CAGE analysis