Hb_000340_310

Information

Type -
Description -
Location Contig340: 271693-275392
Sequence    

Annotation

kegg
ID rcu:RCOM_0647510
description nutrient reservoir, putative
nr
ID XP_012092315.1
description PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
swissprot
ID Q0WPJ7
description Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1
trembl
ID A0A067JCF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21992 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase rf298

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_310 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
2 Hb_000111_450 0.1110206401 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
3 Hb_003994_190 0.1120306672 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001096_110 0.117882942 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
5 Hb_000130_110 0.1252602916 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
6 Hb_013405_140 0.1261804414 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
7 Hb_002026_120 0.1283376369 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
8 Hb_002078_440 0.1287888661 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
9 Hb_001102_210 0.1295145942 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
10 Hb_001279_340 0.1364132373 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
11 Hb_011485_020 0.139757968 - - protein with unknown function [Ricinus communis]
12 Hb_000530_070 0.1414092405 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
13 Hb_000934_190 0.1416709665 - - SER/ARG-rich protein 34A [Theobroma cacao]
14 Hb_011021_040 0.1424447172 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
15 Hb_005928_100 0.1430328178 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
16 Hb_000096_150 0.1430537234 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
17 Hb_003462_120 0.1476375164 - - Acidic endochitinase [Theobroma cacao]
18 Hb_005278_040 0.1480555521 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
19 Hb_001545_100 0.1484811652 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
20 Hb_002016_080 0.1496139846 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_310 Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000340_310--Hb_000111_450 Hb_003994_190 Hb_003994_190 Hb_000340_310--Hb_003994_190 Hb_001096_110 Hb_001096_110 Hb_000340_310--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_000340_310--Hb_000130_110 Hb_013405_140 Hb_013405_140 Hb_000340_310--Hb_013405_140 Hb_002026_120 Hb_002026_120 Hb_000340_310--Hb_002026_120 Hb_000111_450--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_000111_450--Hb_011485_020 Hb_002284_200 Hb_002284_200 Hb_000111_450--Hb_002284_200 Hb_000479_160 Hb_000479_160 Hb_000111_450--Hb_000479_160 Hb_000111_450--Hb_003994_190 Hb_001776_160 Hb_001776_160 Hb_000111_450--Hb_001776_160 Hb_001279_340 Hb_001279_340 Hb_003994_190--Hb_001279_340 Hb_005928_100 Hb_005928_100 Hb_003994_190--Hb_005928_100 Hb_003994_190--Hb_000130_110 Hb_002043_050 Hb_002043_050 Hb_003994_190--Hb_002043_050 Hb_001159_080 Hb_001159_080 Hb_001096_110--Hb_001159_080 Hb_005569_020 Hb_005569_020 Hb_001096_110--Hb_005569_020 Hb_003581_260 Hb_003581_260 Hb_001096_110--Hb_003581_260 Hb_010407_180 Hb_010407_180 Hb_001096_110--Hb_010407_180 Hb_001096_110--Hb_001279_340 Hb_000108_070 Hb_000108_070 Hb_001096_110--Hb_000108_070 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000130_110--Hb_000111_450 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_002016_080 Hb_002016_080 Hb_013405_140--Hb_002016_080 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_000928_130 Hb_000928_130 Hb_002026_120--Hb_000928_130 Hb_000096_150 Hb_000096_150 Hb_002026_120--Hb_000096_150 Hb_023344_050 Hb_023344_050 Hb_002026_120--Hb_023344_050 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_000318_160 Hb_000318_160 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.805692 0.348341 1.02412 1.30968 0.234187 0.191471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7761 2.58553 3.72967 1.11556 0.831713

CAGE analysis