Hb_000340_320

Information

Type -
Description -
Location Contig340: 278221-280868
Sequence    

Annotation

kegg
ID rcu:RCOM_0647110
description hydrolase, putative
nr
ID XP_012092317.1
description PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21993 PE=4 SV=1
Gene Ontology
ID GO:0016787
description dnase i-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_320 0.0 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
2 Hb_001080_280 0.123363176 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
3 Hb_004705_120 0.1280912724 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000731_260 0.1325204046 - - hypothetical protein RCOM_0905090 [Ricinus communis]
5 Hb_002217_230 0.1365416548 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
6 Hb_000005_080 0.1431671379 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
7 Hb_000599_350 0.1440656698 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
8 Hb_000108_070 0.1453531763 - - alpha-tubulin 1 [Hevea brasiliensis]
9 Hb_007181_070 0.1466422862 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
10 Hb_011953_020 0.1481206746 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
11 Hb_003972_080 0.1494805299 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
12 Hb_009113_050 0.1502391347 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
13 Hb_001481_140 0.1542543861 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
14 Hb_000635_150 0.1543124781 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
15 Hb_158092_010 0.1561190132 - - CYP51 [Hevea brasiliensis]
16 Hb_001519_030 0.1566256873 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
17 Hb_032208_060 0.15744222 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
18 Hb_000130_050 0.1580718056 - - 14-3-3 protein, putative [Ricinus communis]
19 Hb_001519_050 0.1596259972 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
20 Hb_003462_120 0.1596264435 - - Acidic endochitinase [Theobroma cacao]

Gene co-expression network

sample Hb_000340_320 Hb_000340_320 Hb_001080_280 Hb_001080_280 Hb_000340_320--Hb_001080_280 Hb_004705_120 Hb_004705_120 Hb_000340_320--Hb_004705_120 Hb_000731_260 Hb_000731_260 Hb_000340_320--Hb_000731_260 Hb_002217_230 Hb_002217_230 Hb_000340_320--Hb_002217_230 Hb_000005_080 Hb_000005_080 Hb_000340_320--Hb_000005_080 Hb_000599_350 Hb_000599_350 Hb_000340_320--Hb_000599_350 Hb_001080_280--Hb_004705_120 Hb_001519_030 Hb_001519_030 Hb_001080_280--Hb_001519_030 Hb_000635_150 Hb_000635_150 Hb_001080_280--Hb_000635_150 Hb_000123_170 Hb_000123_170 Hb_001080_280--Hb_000123_170 Hb_001105_070 Hb_001105_070 Hb_001080_280--Hb_001105_070 Hb_011953_020 Hb_011953_020 Hb_001080_280--Hb_011953_020 Hb_001519_050 Hb_001519_050 Hb_004705_120--Hb_001519_050 Hb_000125_190 Hb_000125_190 Hb_004705_120--Hb_000125_190 Hb_008616_070 Hb_008616_070 Hb_004705_120--Hb_008616_070 Hb_000373_130 Hb_000373_130 Hb_004705_120--Hb_000373_130 Hb_015778_010 Hb_015778_010 Hb_004705_120--Hb_015778_010 Hb_000731_260--Hb_004705_120 Hb_004679_050 Hb_004679_050 Hb_000731_260--Hb_004679_050 Hb_000108_070 Hb_000108_070 Hb_000731_260--Hb_000108_070 Hb_000731_260--Hb_001080_280 Hb_000521_130 Hb_000521_130 Hb_000731_260--Hb_000521_130 Hb_148113_010 Hb_148113_010 Hb_000731_260--Hb_148113_010 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_001638_230 Hb_001638_230 Hb_002217_230--Hb_001638_230 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_004931_100 Hb_004931_100 Hb_002217_230--Hb_004931_100 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030 Hb_000005_080--Hb_001519_050 Hb_000705_210 Hb_000705_210 Hb_000005_080--Hb_000705_210 Hb_002061_040 Hb_002061_040 Hb_000005_080--Hb_002061_040 Hb_001247_100 Hb_001247_100 Hb_000005_080--Hb_001247_100 Hb_000009_460 Hb_000009_460 Hb_000005_080--Hb_000009_460 Hb_004738_100 Hb_004738_100 Hb_000005_080--Hb_004738_100 Hb_000599_350--Hb_032208_060 Hb_003687_240 Hb_003687_240 Hb_000599_350--Hb_003687_240 Hb_000599_350--Hb_011953_020 Hb_000340_390 Hb_000340_390 Hb_000599_350--Hb_000340_390 Hb_012114_040 Hb_012114_040 Hb_000599_350--Hb_012114_040 Hb_007181_070 Hb_007181_070 Hb_000599_350--Hb_007181_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.653437 0.405996 0.271972 1.11668 0.193253 0.682335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57789 1.14589 2.06515 1.06689 0.0999893

CAGE analysis