Hb_000340_330

Information

Type -
Description -
Location Contig340: 282653-282916
Sequence    

Annotation

kegg
ID cit:102611689
description probable indole-3-acetic acid-amido synthetase GH3.6-like
nr
ID XP_012092494.1
description PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21995 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_330 0.0 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
2 Hb_103093_010 0.1621749151 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
3 Hb_000130_170 0.1640386215 - - -
4 Hb_002450_130 0.1774920729 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
5 Hb_000683_090 0.2001178141 - - stress enhanced protein [Medicago truncatula]
6 Hb_005723_070 0.2067059464 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
7 Hb_005318_020 0.207519301 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
8 Hb_008096_020 0.2125873161 - - -
9 Hb_060458_010 0.2129740243 - - conserved hypothetical protein [Ricinus communis]
10 Hb_094132_010 0.2144413414 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
11 Hb_000066_180 0.2147586416 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
12 Hb_001222_040 0.2175953748 - - -
13 Hb_000193_030 0.2198462072 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
14 Hb_000876_010 0.2283679667 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
15 Hb_000732_280 0.2400286831 - - hypothetical protein B456_009G173700 [Gossypium raimondii]
16 Hb_007188_050 0.2408645933 - - -
17 Hb_079978_010 0.2437981519 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
18 Hb_021943_070 0.2448853365 - - -
19 Hb_007447_020 0.2449000537 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
20 Hb_000291_130 0.2450366176 - - -

Gene co-expression network

sample Hb_000340_330 Hb_000340_330 Hb_103093_010 Hb_103093_010 Hb_000340_330--Hb_103093_010 Hb_000130_170 Hb_000130_170 Hb_000340_330--Hb_000130_170 Hb_002450_130 Hb_002450_130 Hb_000340_330--Hb_002450_130 Hb_000683_090 Hb_000683_090 Hb_000340_330--Hb_000683_090 Hb_005723_070 Hb_005723_070 Hb_000340_330--Hb_005723_070 Hb_005318_020 Hb_005318_020 Hb_000340_330--Hb_005318_020 Hb_094132_010 Hb_094132_010 Hb_103093_010--Hb_094132_010 Hb_000193_030 Hb_000193_030 Hb_103093_010--Hb_000193_030 Hb_103093_010--Hb_000130_170 Hb_021943_070 Hb_021943_070 Hb_103093_010--Hb_021943_070 Hb_103093_010--Hb_005723_070 Hb_000130_170--Hb_005723_070 Hb_000130_170--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_000130_170--Hb_000876_010 Hb_005318_010 Hb_005318_010 Hb_000130_170--Hb_005318_010 Hb_008096_020 Hb_008096_020 Hb_002450_130--Hb_008096_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_002450_130--Hb_000876_010 Hb_002972_060 Hb_002972_060 Hb_002450_130--Hb_002972_060 Hb_002450_130--Hb_005723_070 Hb_007447_020 Hb_007447_020 Hb_000683_090--Hb_007447_020 Hb_000683_090--Hb_005318_020 Hb_000683_090--Hb_008096_020 Hb_031866_050 Hb_031866_050 Hb_000683_090--Hb_031866_050 Hb_001222_040 Hb_001222_040 Hb_000683_090--Hb_001222_040 Hb_169170_010 Hb_169170_010 Hb_000683_090--Hb_169170_010 Hb_005723_070--Hb_000876_010 Hb_005723_070--Hb_002972_060 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_079978_010 Hb_079978_010 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_005318_020--Hb_007447_020 Hb_005318_020--Hb_169170_010 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.563139 0.689574 0.204296 12.9419 1.11689 27.3315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.21377 1.37342 0

CAGE analysis