Hb_000340_360

Information

Type -
Description -
Location Contig340: 291383-294998
Sequence    

Annotation

kegg
ID rcu:RCOM_0647050
description kinase, putative (EC:2.7.11.30)
nr
ID XP_012092322.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
swissprot
ID P93050
description Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=2 SV=1
trembl
ID A0A067JCF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21997 PE=3 SV=1
Gene Ontology
ID GO:0004702
description probable lrr receptor-like serine threonine-protein kinase rkf3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_360 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
2 Hb_014006_010 0.0770569554 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
3 Hb_000369_080 0.0844695292 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
4 Hb_001951_100 0.0866105264 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
5 Hb_013405_180 0.0920717947 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
6 Hb_013399_090 0.0929879938 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
7 Hb_005183_140 0.0946490305 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
8 Hb_002248_120 0.1013615077 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
9 Hb_006794_020 0.1033227929 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
10 Hb_000413_250 0.1045929761 - - Cysteine-rich RLK 29 [Theobroma cacao]
11 Hb_003124_270 0.1065929105 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
12 Hb_021079_020 0.1066793273 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
13 Hb_000015_090 0.1071514621 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
14 Hb_001499_070 0.1079852244 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
15 Hb_002078_470 0.1087358537 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
16 Hb_003581_130 0.1100072554 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000404_030 0.1115329861 - - PREDICTED: protein NAP1 [Jatropha curcas]
18 Hb_004586_090 0.1122080966 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
19 Hb_001221_300 0.1124438381 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
20 Hb_000367_020 0.1130953752 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_360 Hb_000340_360 Hb_014006_010 Hb_014006_010 Hb_000340_360--Hb_014006_010 Hb_000369_080 Hb_000369_080 Hb_000340_360--Hb_000369_080 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_013399_090 Hb_013399_090 Hb_000340_360--Hb_013399_090 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140 Hb_014006_010--Hb_013399_090 Hb_004586_090 Hb_004586_090 Hb_014006_010--Hb_004586_090 Hb_002078_470 Hb_002078_470 Hb_014006_010--Hb_002078_470 Hb_000221_180 Hb_000221_180 Hb_014006_010--Hb_000221_180 Hb_000154_130 Hb_000154_130 Hb_014006_010--Hb_000154_130 Hb_001221_300 Hb_001221_300 Hb_000369_080--Hb_001221_300 Hb_003581_130 Hb_003581_130 Hb_000369_080--Hb_003581_130 Hb_000369_080--Hb_013399_090 Hb_000369_080--Hb_014006_010 Hb_003124_270 Hb_003124_270 Hb_000369_080--Hb_003124_270 Hb_008686_020 Hb_008686_020 Hb_001951_100--Hb_008686_020 Hb_000367_020 Hb_000367_020 Hb_001951_100--Hb_000367_020 Hb_004696_070 Hb_004696_070 Hb_001951_100--Hb_004696_070 Hb_012490_010 Hb_012490_010 Hb_001951_100--Hb_012490_010 Hb_000445_130 Hb_000445_130 Hb_001951_100--Hb_000445_130 Hb_002248_120 Hb_002248_120 Hb_013405_180--Hb_002248_120 Hb_000008_280 Hb_000008_280 Hb_013405_180--Hb_000008_280 Hb_000170_160 Hb_000170_160 Hb_013405_180--Hb_000170_160 Hb_001998_210 Hb_001998_210 Hb_013405_180--Hb_001998_210 Hb_013405_180--Hb_001951_100 Hb_000025_500 Hb_000025_500 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_013399_090--Hb_004586_090 Hb_000404_030 Hb_000404_030 Hb_005183_140--Hb_000404_030 Hb_005183_140--Hb_014006_010 Hb_002249_030 Hb_002249_030 Hb_005183_140--Hb_002249_030 Hb_001499_070 Hb_001499_070 Hb_005183_140--Hb_001499_070 Hb_006794_020 Hb_006794_020 Hb_005183_140--Hb_006794_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05715 12.0851 6.75802 6.59982 1.84915 2.40376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.865746 1.45047 2.39769 5.04587 11.3546

CAGE analysis