Hb_000340_390

Information

Type -
Description -
Location Contig340: 331704-339011
Sequence    

Annotation

kegg
ID rcu:RCOM_0647030
description breast carcinoma amplified sequence, putative
nr
ID XP_012092325.1
description PREDICTED: autophagy-related protein 18g [Jatropha curcas]
swissprot
ID Q8GUL1
description Autophagy-related protein 18g OS=Arabidopsis thaliana GN=ATG18G PE=2 SV=1
trembl
ID A0A067JFG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21999 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35570: 327842-330899 , PASA_asmbl_35571: 332102-333901 , PASA_asmbl_35573: 334018-336133 , PASA_asmbl_35575: 336160-339183
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_390 0.0 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
2 Hb_000367_060 0.0918460313 - - diacylglycerol kinase, theta, putative [Ricinus communis]
3 Hb_001454_190 0.0990744608 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
4 Hb_003687_240 0.1011688084 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
5 Hb_001959_190 0.1055910914 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
6 Hb_004607_050 0.1075155877 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_001811_030 0.1079247699 - - Beta-ureidopropionase, putative [Ricinus communis]
8 Hb_000076_140 0.1106808852 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_172932_010 0.11156552 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000023_090 0.1140932881 - - mak, putative [Ricinus communis]
11 Hb_000999_050 0.1147479053 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
12 Hb_021596_040 0.1151951198 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000599_350 0.1164942977 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
14 Hb_129910_010 0.1167050946 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
15 Hb_001507_040 0.1170840918 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001898_070 0.1180186865 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
17 Hb_010608_050 0.119132616 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
18 Hb_000866_170 0.1198922699 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001699_130 0.1199608034 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
20 Hb_012325_020 0.1201785659 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_390 Hb_000340_390 Hb_000367_060 Hb_000367_060 Hb_000340_390--Hb_000367_060 Hb_001454_190 Hb_001454_190 Hb_000340_390--Hb_001454_190 Hb_003687_240 Hb_003687_240 Hb_000340_390--Hb_003687_240 Hb_001959_190 Hb_001959_190 Hb_000340_390--Hb_001959_190 Hb_004607_050 Hb_004607_050 Hb_000340_390--Hb_004607_050 Hb_001811_030 Hb_001811_030 Hb_000340_390--Hb_001811_030 Hb_000696_040 Hb_000696_040 Hb_000367_060--Hb_000696_040 Hb_001699_130 Hb_001699_130 Hb_000367_060--Hb_001699_130 Hb_002435_120 Hb_002435_120 Hb_000367_060--Hb_002435_120 Hb_021596_040 Hb_021596_040 Hb_000367_060--Hb_021596_040 Hb_000367_060--Hb_001959_190 Hb_172932_010 Hb_172932_010 Hb_001454_190--Hb_172932_010 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_016901_010 Hb_016901_010 Hb_001454_190--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_001454_190--Hb_000617_150 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050 Hb_011534_030 Hb_011534_030 Hb_001454_190--Hb_011534_030 Hb_010883_090 Hb_010883_090 Hb_003687_240--Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_003687_240--Hb_002631_060 Hb_000805_020 Hb_000805_020 Hb_003687_240--Hb_000805_020 Hb_007747_200 Hb_007747_200 Hb_003687_240--Hb_007747_200 Hb_003687_240--Hb_000696_040 Hb_003687_240--Hb_021596_040 Hb_020805_130 Hb_020805_130 Hb_001959_190--Hb_020805_130 Hb_004607_030 Hb_004607_030 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_009803_050 Hb_009803_050 Hb_001959_190--Hb_009803_050 Hb_001507_040 Hb_001507_040 Hb_001959_190--Hb_001507_040 Hb_000999_050 Hb_000999_050 Hb_004607_050--Hb_000999_050 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_006938_080 Hb_006938_080 Hb_004607_050--Hb_006938_080 Hb_001014_040 Hb_001014_040 Hb_001811_030--Hb_001014_040 Hb_004079_030 Hb_004079_030 Hb_001811_030--Hb_004079_030 Hb_000922_390 Hb_000922_390 Hb_001811_030--Hb_000922_390 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_008616_070 Hb_008616_070 Hb_001811_030--Hb_008616_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.38216 6.30811 1.56265 5.52252 6.23041 7.62905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.34225 9.86292 19.8721 11.9039 5.82062

CAGE analysis