Hb_000340_430

Information

Type -
Description -
Location Contig340: 361599-364668
Sequence    

Annotation

kegg
ID rcu:RCOM_0646960
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002524769.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O49343
description Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1
trembl
ID B9SFK0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0646960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35583: 361783-362307 , PASA_asmbl_35584: 362393-362810
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_430 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_102864_010 0.1169788738 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
3 Hb_000599_090 0.1248509343 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
4 Hb_001191_100 0.1251753195 - - F-actin capping protein beta subunit [Populus trichocarpa]
5 Hb_002307_090 0.1266709543 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
6 Hb_001488_100 0.1269366309 - - -
7 Hb_000111_280 0.1271054444 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
8 Hb_005000_290 0.1284442425 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
9 Hb_000032_260 0.1294986549 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
10 Hb_009026_050 0.1298145768 - - vacuolar ATPase F subunit [Hevea brasiliensis]
11 Hb_000061_160 0.1314295173 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
12 Hb_000856_340 0.1361675228 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
13 Hb_001478_050 0.1367118833 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
14 Hb_030620_010 0.1367809288 - - -
15 Hb_007229_060 0.136795035 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
16 Hb_000252_040 0.137793905 - - PREDICTED: uncharacterized protein LOC105140231 [Populus euphratica]
17 Hb_001366_230 0.1385069562 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001220_040 0.1388435633 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
19 Hb_029223_030 0.1395607388 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
20 Hb_002835_170 0.1400312232 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_430 Hb_000340_430 Hb_102864_010 Hb_102864_010 Hb_000340_430--Hb_102864_010 Hb_000599_090 Hb_000599_090 Hb_000340_430--Hb_000599_090 Hb_001191_100 Hb_001191_100 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_001488_100 Hb_001488_100 Hb_000340_430--Hb_001488_100 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280 Hb_030620_010 Hb_030620_010 Hb_102864_010--Hb_030620_010 Hb_004223_230 Hb_004223_230 Hb_102864_010--Hb_004223_230 Hb_001804_040 Hb_001804_040 Hb_102864_010--Hb_001804_040 Hb_001366_230 Hb_001366_230 Hb_102864_010--Hb_001366_230 Hb_007451_030 Hb_007451_030 Hb_102864_010--Hb_007451_030 Hb_009252_130 Hb_009252_130 Hb_000599_090--Hb_009252_130 Hb_000563_590 Hb_000563_590 Hb_000599_090--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_000599_090--Hb_001621_180 Hb_000061_480 Hb_000061_480 Hb_000599_090--Hb_000061_480 Hb_000599_090--Hb_000111_280 Hb_000531_020 Hb_000531_020 Hb_000599_090--Hb_000531_020 Hb_001191_100--Hb_001366_230 Hb_000173_170 Hb_000173_170 Hb_001191_100--Hb_000173_170 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_065500_050 Hb_065500_050 Hb_001191_100--Hb_065500_050 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001366_220 Hb_001366_220 Hb_001191_100--Hb_001366_220 Hb_001946_320 Hb_001946_320 Hb_002307_090--Hb_001946_320 Hb_001232_130 Hb_001232_130 Hb_002307_090--Hb_001232_130 Hb_007229_060 Hb_007229_060 Hb_002307_090--Hb_007229_060 Hb_000861_040 Hb_000861_040 Hb_002307_090--Hb_000861_040 Hb_005000_290 Hb_005000_290 Hb_002307_090--Hb_005000_290 Hb_002291_030 Hb_002291_030 Hb_002307_090--Hb_002291_030 Hb_002301_320 Hb_002301_320 Hb_001488_100--Hb_002301_320 Hb_003497_030 Hb_003497_030 Hb_001488_100--Hb_003497_030 Hb_002835_170 Hb_002835_170 Hb_001488_100--Hb_002835_170 Hb_011457_170 Hb_011457_170 Hb_001488_100--Hb_011457_170 Hb_001606_070 Hb_001606_070 Hb_001488_100--Hb_001606_070 Hb_000648_060 Hb_000648_060 Hb_000111_280--Hb_000648_060 Hb_183963_020 Hb_183963_020 Hb_000111_280--Hb_183963_020 Hb_005694_080 Hb_005694_080 Hb_000111_280--Hb_005694_080 Hb_007021_020 Hb_007021_020 Hb_000111_280--Hb_007021_020 Hb_000111_280--Hb_009252_130 Hb_000567_170 Hb_000567_170 Hb_000111_280--Hb_000567_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.81878 0.204883 0.187064 0.0361044 1.81059 1.53918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35476 3.19656 2.39832 0.349077 0.0807791

CAGE analysis