Hb_000340_500

Information

Type -
Description -
Location Contig340: 407094-415916
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04190g
description POPTRDRAFT_666263; hypothetical protein
nr
ID XP_012092338.1
description PREDICTED: aldo-keto reductase-like [Jatropha curcas]
swissprot
ID P0A9T5
description Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1
trembl
ID B9IE88
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s04190g PE=4 SV=1
Gene Ontology
ID GO:0016491
description aldo-keto reductase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35588: 407358-408529 , PASA_asmbl_35589: 408583-410235 , PASA_asmbl_35590: 413046-415679
cDNA
(Sanger)
(ID:Location)		 008_D19.ab1: 407358-408210 , 017_A22.ab1: 409096-410164

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_500 0.0 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
2 Hb_002081_030 0.1302318477 - - unnamed protein product [Coffea canephora]
3 Hb_000809_060 0.1312731826 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
4 Hb_000258_250 0.1327795656 - - Origin recognition complex subunit, putative [Ricinus communis]
5 Hb_002686_180 0.1364785596 - - PREDICTED: early nodulin-93-like [Populus euphratica]
6 Hb_024074_010 0.1374305938 - - PREDICTED: cytochrome c [Jatropha curcas]
7 Hb_001726_040 0.1391233929 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
8 Hb_007441_260 0.1429881154 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
9 Hb_000356_090 0.1432741336 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
10 Hb_011609_020 0.1436617179 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027472_160 0.1450632364 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
12 Hb_005656_190 0.1488433707 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
13 Hb_000742_280 0.1522003689 - - ATP binding protein, putative [Ricinus communis]
14 Hb_009075_010 0.1544228708 - - 60S ribosomal protein L10B [Hevea brasiliensis]
15 Hb_001114_080 0.1549628919 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
16 Hb_048476_100 0.1550203835 - - PREDICTED: glutathione S-transferase U9-like [Vitis vinifera]
17 Hb_000200_200 0.1553496738 - - PREDICTED: putative zinc finger protein At1g68190 isoform X2 [Jatropha curcas]
18 Hb_001252_220 0.1554497684 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
19 Hb_000087_130 0.1555009772 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
20 Hb_000069_700 0.1557852163 - - hypothetical protein B456_005G003200 [Gossypium raimondii]

Gene co-expression network

sample Hb_000340_500 Hb_000340_500 Hb_002081_030 Hb_002081_030 Hb_000340_500--Hb_002081_030 Hb_000809_060 Hb_000809_060 Hb_000340_500--Hb_000809_060 Hb_000258_250 Hb_000258_250 Hb_000340_500--Hb_000258_250 Hb_002686_180 Hb_002686_180 Hb_000340_500--Hb_002686_180 Hb_024074_010 Hb_024074_010 Hb_000340_500--Hb_024074_010 Hb_001726_040 Hb_001726_040 Hb_000340_500--Hb_001726_040 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_002081_030--Hb_001726_040 Hb_000948_220 Hb_000948_220 Hb_002081_030--Hb_000948_220 Hb_002081_030--Hb_000809_060 Hb_027472_160 Hb_027472_160 Hb_002081_030--Hb_027472_160 Hb_009778_040 Hb_009778_040 Hb_002081_030--Hb_009778_040 Hb_000809_060--Hb_009778_040 Hb_007885_010 Hb_007885_010 Hb_000809_060--Hb_007885_010 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040 Hb_000189_240 Hb_000189_240 Hb_000258_250--Hb_000189_240 Hb_000731_190 Hb_000731_190 Hb_000258_250--Hb_000731_190 Hb_000356_090 Hb_000356_090 Hb_000258_250--Hb_000356_090 Hb_011609_020 Hb_011609_020 Hb_000258_250--Hb_011609_020 Hb_055062_020 Hb_055062_020 Hb_000258_250--Hb_055062_020 Hb_000302_140 Hb_000302_140 Hb_000258_250--Hb_000302_140 Hb_000134_320 Hb_000134_320 Hb_002686_180--Hb_000134_320 Hb_002686_180--Hb_024074_010 Hb_015299_030 Hb_015299_030 Hb_002686_180--Hb_015299_030 Hb_001431_080 Hb_001431_080 Hb_002686_180--Hb_001431_080 Hb_132840_140 Hb_132840_140 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020 Hb_024074_010--Hb_000302_140 Hb_002260_010 Hb_002260_010 Hb_024074_010--Hb_002260_010 Hb_024074_010--Hb_000731_190 Hb_001053_140 Hb_001053_140 Hb_024074_010--Hb_001053_140 Hb_004057_010 Hb_004057_010 Hb_024074_010--Hb_004057_010 Hb_131181_010 Hb_131181_010 Hb_024074_010--Hb_131181_010 Hb_000069_700 Hb_000069_700 Hb_001726_040--Hb_000069_700 Hb_001726_040--Hb_004057_010 Hb_001726_040--Hb_000087_130 Hb_001726_040--Hb_000189_240 Hb_000735_040 Hb_000735_040 Hb_001726_040--Hb_000735_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98475 2.91056 28.665 17.9611 3.98606 4.88668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6252 52.9132 25.9951 8.5808 5.49063

CAGE analysis