Hb_000340_530

Information

Type -
Description -
Location Contig340: 439369-458324
Sequence    

Annotation

kegg
ID rcu:RCOM_0557120
description stromal antigen, putative
nr
ID CAN67841.1
description hypothetical protein VITISV_016664 [Vitis vinifera]
swissprot
ID O82265
description Sister-chromatid cohesion protein 3 OS=Arabidopsis thaliana GN=SCC3 PE=1 SV=2
trembl
ID A5BEN5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016664 PE=4 SV=1
Gene Ontology
ID GO:0005634
description sister-chromatid cohesion protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35594: 440433-441728 , PASA_asmbl_35595: 442906-444406 , PASA_asmbl_35596: 449656-457847 , PASA_asmbl_35597: 455156-455279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_530 0.0 - - hypothetical protein VITISV_016664 [Vitis vinifera]
2 Hb_002989_020 0.0448661506 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
3 Hb_011063_050 0.0483718568 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
4 Hb_093458_040 0.0537705815 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
5 Hb_001679_050 0.0574163781 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
6 Hb_000116_450 0.0580922359 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
7 Hb_004109_080 0.0588435817 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
8 Hb_001408_140 0.0592424769 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
9 Hb_000258_070 0.060932849 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
10 Hb_001814_030 0.0617447988 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
11 Hb_000029_300 0.0618737839 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
12 Hb_002849_130 0.0621056011 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
13 Hb_002263_020 0.0625142866 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
14 Hb_000347_430 0.0632991061 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
15 Hb_000258_160 0.0633550751 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000923_010 0.0635260795 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
17 Hb_002026_210 0.0635581533 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
18 Hb_000406_200 0.0637373078 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
19 Hb_000614_210 0.0642502173 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
20 Hb_013399_020 0.0650427908 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_530 Hb_000340_530 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_093458_040 Hb_093458_040 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_002989_020--Hb_011063_050 Hb_010142_020 Hb_010142_020 Hb_002989_020--Hb_010142_020 Hb_002989_020--Hb_093458_040 Hb_000477_050 Hb_000477_050 Hb_002989_020--Hb_000477_050 Hb_002989_020--Hb_001679_050 Hb_011063_050--Hb_010142_020 Hb_011063_050--Hb_001679_050 Hb_011063_050--Hb_093458_040 Hb_010515_020 Hb_010515_020 Hb_011063_050--Hb_010515_020 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_004990_010 Hb_004990_010 Hb_001679_050--Hb_004990_010 Hb_008279_040 Hb_008279_040 Hb_001679_050--Hb_008279_040 Hb_000574_450 Hb_000574_450 Hb_001679_050--Hb_000574_450 Hb_013738_020 Hb_013738_020 Hb_000116_450--Hb_013738_020 Hb_002374_370 Hb_002374_370 Hb_000116_450--Hb_002374_370 Hb_003938_090 Hb_003938_090 Hb_000116_450--Hb_003938_090 Hb_000116_450--Hb_093458_040 Hb_000258_070 Hb_000258_070 Hb_000116_450--Hb_000258_070 Hb_004567_090 Hb_004567_090 Hb_004109_080--Hb_004567_090 Hb_012498_010 Hb_012498_010 Hb_004109_080--Hb_012498_010 Hb_005291_050 Hb_005291_050 Hb_004109_080--Hb_005291_050 Hb_002263_020 Hb_002263_020 Hb_004109_080--Hb_002263_020 Hb_000406_200 Hb_000406_200 Hb_004109_080--Hb_000406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3638 18.554 14.4029 19.9159 18.4178 16.4823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4064 17.6518 16.054 18.3933 18.5179

CAGE analysis