Hb_000340_560

Information

Type -
Description -
Location Contig340: 468215-468679
Sequence    

Annotation

kegg
ID rcu:RCOM_0556880
description hypothetical protein
nr
ID XP_002520702.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3Y3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0556880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35603: 468382-468688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_560 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_033053_010 0.1374826344 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_000594_110 0.1375959955 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
4 Hb_001246_160 0.1411632462 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_017857_010 0.1438921488 - - -
6 Hb_164926_050 0.1450999384 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
7 Hb_002122_030 0.1473901734 - - -
8 Hb_007574_050 0.1585885407 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
9 Hb_001329_080 0.1586481218 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
10 Hb_006615_160 0.158741384 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
11 Hb_002311_150 0.1590191814 - - Protein COBRA precursor, putative [Ricinus communis]
12 Hb_005375_070 0.1609097256 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
13 Hb_053519_010 0.1667844083 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
14 Hb_001294_050 0.167762421 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
15 Hb_012272_010 0.1695510828 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_031108_010 0.1699334879 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
17 Hb_007904_290 0.1715362053 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
18 Hb_001102_090 0.1732540921 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
19 Hb_005048_120 0.1739701157 - - -
20 Hb_000610_060 0.1742415204 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]

Gene co-expression network

sample Hb_000340_560 Hb_000340_560 Hb_033053_010 Hb_033053_010 Hb_000340_560--Hb_033053_010 Hb_000594_110 Hb_000594_110 Hb_000340_560--Hb_000594_110 Hb_001246_160 Hb_001246_160 Hb_000340_560--Hb_001246_160 Hb_017857_010 Hb_017857_010 Hb_000340_560--Hb_017857_010 Hb_164926_050 Hb_164926_050 Hb_000340_560--Hb_164926_050 Hb_002122_030 Hb_002122_030 Hb_000340_560--Hb_002122_030 Hb_046109_010 Hb_046109_010 Hb_033053_010--Hb_046109_010 Hb_033053_010--Hb_164926_050 Hb_007574_050 Hb_007574_050 Hb_033053_010--Hb_007574_050 Hb_007904_290 Hb_007904_290 Hb_033053_010--Hb_007904_290 Hb_012272_010 Hb_012272_010 Hb_033053_010--Hb_012272_010 Hb_041895_040 Hb_041895_040 Hb_000594_110--Hb_041895_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_033327_010 Hb_033327_010 Hb_000594_110--Hb_033327_010 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_005394_010 Hb_005394_010 Hb_001246_160--Hb_005394_010 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_005375_070 Hb_005375_070 Hb_017857_010--Hb_005375_070 Hb_006615_160 Hb_006615_160 Hb_017857_010--Hb_006615_160 Hb_000776_050 Hb_000776_050 Hb_017857_010--Hb_000776_050 Hb_098160_010 Hb_098160_010 Hb_017857_010--Hb_098160_010 Hb_017857_010--Hb_007574_050 Hb_001898_010 Hb_001898_010 Hb_017857_010--Hb_001898_010 Hb_000069_430 Hb_000069_430 Hb_164926_050--Hb_000069_430 Hb_002078_250 Hb_002078_250 Hb_164926_050--Hb_002078_250 Hb_164926_050--Hb_007574_050 Hb_005000_050 Hb_005000_050 Hb_164926_050--Hb_005000_050 Hb_002235_370 Hb_002235_370 Hb_164926_050--Hb_002235_370 Hb_002122_030--Hb_000009_200 Hb_000805_040 Hb_000805_040 Hb_002122_030--Hb_000805_040 Hb_005714_100 Hb_005714_100 Hb_002122_030--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_002122_030--Hb_011689_100 Hb_004712_160 Hb_004712_160 Hb_002122_030--Hb_004712_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3183 14.9048 13.619 10.5642 1.41433 0.639595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151618 1.42917 0.397141 3.89114 1.31297

CAGE analysis