Hb_000340_570

Information

Type -
Description -
Location Contig340: 474084-479949
Sequence    

Annotation

kegg
ID rcu:RCOM_0556860
description RNA binding protein, putative
nr
ID XP_012092351.1
description PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
swissprot
ID Q8LFS6
description RNA-binding protein BRN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1
trembl
ID A0A067JCH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22017 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cugbp elav-like family member 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35604: 475680-479416 , PASA_asmbl_35605: 478662-478905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_570 0.0 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
2 Hb_001545_160 0.0661853593 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
3 Hb_006831_120 0.069066668 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
4 Hb_010175_040 0.0733435122 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
5 Hb_004899_370 0.0737512934 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
6 Hb_000261_140 0.0756556575 - - -
7 Hb_000205_090 0.0771788455 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
8 Hb_004143_150 0.0777378077 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
9 Hb_004109_170 0.0786678079 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_004635_100 0.0793600658 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
11 Hb_010098_050 0.0796276916 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
12 Hb_000638_250 0.0815048301 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_001616_040 0.0816049453 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
14 Hb_000680_140 0.082721471 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
15 Hb_001776_160 0.0831332739 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
16 Hb_000327_060 0.0837194629 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
17 Hb_000103_320 0.084026904 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_000920_110 0.0848055384 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
19 Hb_001396_100 0.0848689965 - - DNA binding protein, putative [Ricinus communis]
20 Hb_000571_020 0.0848925599 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000340_570 Hb_000340_570 Hb_001545_160 Hb_001545_160 Hb_000340_570--Hb_001545_160 Hb_006831_120 Hb_006831_120 Hb_000340_570--Hb_006831_120 Hb_010175_040 Hb_010175_040 Hb_000340_570--Hb_010175_040 Hb_004899_370 Hb_004899_370 Hb_000340_570--Hb_004899_370 Hb_000261_140 Hb_000261_140 Hb_000340_570--Hb_000261_140 Hb_000205_090 Hb_000205_090 Hb_000340_570--Hb_000205_090 Hb_000327_060 Hb_000327_060 Hb_001545_160--Hb_000327_060 Hb_003502_060 Hb_003502_060 Hb_001545_160--Hb_003502_060 Hb_158445_010 Hb_158445_010 Hb_001545_160--Hb_158445_010 Hb_002304_160 Hb_002304_160 Hb_001545_160--Hb_002304_160 Hb_012423_030 Hb_012423_030 Hb_001545_160--Hb_012423_030 Hb_001776_160 Hb_001776_160 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_004143_150 Hb_004143_150 Hb_004899_370--Hb_004143_150 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_000001_060 Hb_000001_060 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004127_020 Hb_004127_020 Hb_004899_370--Hb_004127_020 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000261_140--Hb_000920_110 Hb_001484_070 Hb_001484_070 Hb_000261_140--Hb_001484_070 Hb_000261_140--Hb_000638_250 Hb_000261_140--Hb_004143_150 Hb_004109_170 Hb_004109_170 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36035 2.69814 4.09351 3.41928 2.61832 3.03358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.33631 8.99261 6.5863 2.95166 3.2484

CAGE analysis