Hb_000342_020

Information

Type -
Description -
Location Contig342: 3375-6888
Sequence    

Annotation

kegg
ID rcu:RCOM_0797780
description bel1 homeotic protein, putative
nr
ID XP_002516458.1
description bel1 homeotic protein, putative [Ricinus communis]
swissprot
ID P48731
description Homeobox protein ATH1 OS=Arabidopsis thaliana GN=ATH1 PE=1 SV=1
trembl
ID B9RRT9
description Bel1 homeotic protein, putative OS=Ricinus communis GN=RCOM_0797780 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein ath1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35726: 3577-7602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_020 0.0 - - bel1 homeotic protein, putative [Ricinus communis]
2 Hb_000613_250 0.0745010884 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
3 Hb_000472_020 0.0803525614 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
4 Hb_002902_040 0.0804566215 - - PREDICTED: peroxidase 51 [Jatropha curcas]
5 Hb_144703_010 0.0811753332 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
6 Hb_019496_040 0.0832691124 - - kinase family protein [Populus trichocarpa]
7 Hb_002151_020 0.091171673 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
8 Hb_001269_400 0.0912656806 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
9 Hb_106089_010 0.0946242043 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_001544_070 0.1007405629 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
11 Hb_012787_060 0.1028839873 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
12 Hb_001048_070 0.1039581084 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
13 Hb_000069_540 0.105516029 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
14 Hb_000473_100 0.1058036528 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_007479_080 0.1070631001 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
16 Hb_142026_010 0.1078451209 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
17 Hb_000162_070 0.1105448138 - - phospholipase C, putative [Ricinus communis]
18 Hb_000398_140 0.1129531317 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
19 Hb_001141_160 0.1158271383 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
20 Hb_012539_100 0.1170538777 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]

Gene co-expression network

sample Hb_000342_020 Hb_000342_020 Hb_000613_250 Hb_000613_250 Hb_000342_020--Hb_000613_250 Hb_000472_020 Hb_000472_020 Hb_000342_020--Hb_000472_020 Hb_002902_040 Hb_002902_040 Hb_000342_020--Hb_002902_040 Hb_144703_010 Hb_144703_010 Hb_000342_020--Hb_144703_010 Hb_019496_040 Hb_019496_040 Hb_000342_020--Hb_019496_040 Hb_002151_020 Hb_002151_020 Hb_000342_020--Hb_002151_020 Hb_000613_250--Hb_000472_020 Hb_004421_010 Hb_004421_010 Hb_000613_250--Hb_004421_010 Hb_000477_110 Hb_000477_110 Hb_000613_250--Hb_000477_110 Hb_001013_050 Hb_001013_050 Hb_000613_250--Hb_001013_050 Hb_000613_250--Hb_144703_010 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_000472_020--Hb_144703_010 Hb_174101_010 Hb_174101_010 Hb_000472_020--Hb_174101_010 Hb_002902_040--Hb_002151_020 Hb_002902_040--Hb_019496_040 Hb_142026_010 Hb_142026_010 Hb_002902_040--Hb_142026_010 Hb_002205_150 Hb_002205_150 Hb_002902_040--Hb_002205_150 Hb_002902_040--Hb_144703_010 Hb_000069_540 Hb_000069_540 Hb_144703_010--Hb_000069_540 Hb_144703_010--Hb_019496_040 Hb_008598_010 Hb_008598_010 Hb_144703_010--Hb_008598_010 Hb_019496_040--Hb_000069_540 Hb_019496_040--Hb_142026_010 Hb_019496_040--Hb_002151_020 Hb_001269_400 Hb_001269_400 Hb_002151_020--Hb_001269_400 Hb_002151_020--Hb_008598_010 Hb_000045_080 Hb_000045_080 Hb_002151_020--Hb_000045_080 Hb_000473_100 Hb_000473_100 Hb_002151_020--Hb_000473_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0238806 5.27612 4.51682 8.91914 0.0393269 0.084588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0180686 0 0.0812783 3.72689 5.31649

CAGE analysis