Hb_000342_050

Information

Type -
Description -
Location Contig342: 56169-63730
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24710g
description POPTRDRAFT_1081434; hypothetical protein
nr
ID XP_006382026.1
description hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
swissprot
ID Q39247
description Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=1 SV=1
trembl
ID U5G8E6
description Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Populus trichocarpa GN=POPTR_0006s24710g PE=3 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 55 kda regulatory subunit b beta isoform-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35735: 56258-56458 , PASA_asmbl_35736: 56493-63746
cDNA
(Sanger)
(ID:Location)		 019_G11.ab1: 58670-61668

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_050 0.0 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
2 Hb_004837_280 0.0653451345 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
3 Hb_001811_170 0.0697116839 - - dynamin, putative [Ricinus communis]
4 Hb_001226_130 0.0733110729 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
5 Hb_000787_200 0.0740615377 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001587_030 0.0750540588 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
7 Hb_000152_700 0.079025094 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
8 Hb_080147_050 0.0810501028 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
9 Hb_020805_180 0.0823323646 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
10 Hb_011674_040 0.0827835016 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
11 Hb_000976_110 0.0832433644 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
12 Hb_001085_080 0.0837763209 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
13 Hb_012325_010 0.0853624485 - - hypothetical protein RCOM_0068670 [Ricinus communis]
14 Hb_000157_070 0.0879737129 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
15 Hb_021576_010 0.0894170106 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
16 Hb_006916_110 0.0906960713 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
17 Hb_006210_010 0.0923619738 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
18 Hb_000318_150 0.0928378268 - - RNA-binding protein Nova-1, putative [Ricinus communis]
19 Hb_060980_010 0.0934566528 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_000027_200 0.0939503685 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]

Gene co-expression network

sample Hb_000342_050 Hb_000342_050 Hb_004837_280 Hb_004837_280 Hb_000342_050--Hb_004837_280 Hb_001811_170 Hb_001811_170 Hb_000342_050--Hb_001811_170 Hb_001226_130 Hb_001226_130 Hb_000342_050--Hb_001226_130 Hb_000787_200 Hb_000787_200 Hb_000342_050--Hb_000787_200 Hb_001587_030 Hb_001587_030 Hb_000342_050--Hb_001587_030 Hb_000152_700 Hb_000152_700 Hb_000342_050--Hb_000152_700 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001307_240 Hb_001307_240 Hb_004837_280--Hb_001307_240 Hb_004837_280--Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080 Hb_001226_130--Hb_001587_030 Hb_000649_060 Hb_000649_060 Hb_001226_130--Hb_000649_060 Hb_001226_130--Hb_000152_700 Hb_000318_150 Hb_000318_150 Hb_000787_200--Hb_000318_150 Hb_011674_040 Hb_011674_040 Hb_000787_200--Hb_011674_040 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000270_170 Hb_000270_170 Hb_000787_200--Hb_000270_170 Hb_001587_030--Hb_000649_060 Hb_065500_020 Hb_065500_020 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_000890_070 Hb_000890_070 Hb_001587_030--Hb_000890_070 Hb_004450_070 Hb_004450_070 Hb_000152_700--Hb_004450_070 Hb_000152_700--Hb_000649_060 Hb_001097_040 Hb_001097_040 Hb_000152_700--Hb_001097_040 Hb_020805_180 Hb_020805_180 Hb_000152_700--Hb_020805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83557 11.8111 12.4023 17.345 6.08263 6.30289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.48075 7.17328 3.89986 20.4187 15.3877

CAGE analysis