Hb_000342_100

Information

Type -
Description -
Location Contig342: 116396-119474
Sequence    

Annotation

kegg
ID cic:CICLE_v10009515mg
description hypothetical protein
nr
ID XP_012077321.1
description PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9VK68
description PITH domain-containing protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1
trembl
ID A0A067KD19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07692 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35743: 116356-120005 , PASA_asmbl_35745: 116380-120005
cDNA
(Sanger)
(ID:Location)		 040_N12r.ab1: 119429-120005

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_100 0.0 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
2 Hb_001140_370 0.0720840168 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
3 Hb_002893_050 0.0764640602 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
4 Hb_062226_140 0.0769709619 - - PREDICTED: protein NEDD1 [Jatropha curcas]
5 Hb_000610_050 0.0776730228 - - skp1, putative [Ricinus communis]
6 Hb_000003_080 0.081111223 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
7 Hb_024071_020 0.0832666323 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
8 Hb_002284_240 0.083782405 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
9 Hb_003599_040 0.0838928011 - - unnamed protein product [Vitis vinifera]
10 Hb_000307_090 0.085333337 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
11 Hb_020581_010 0.0856321845 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000465_390 0.0865128709 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
13 Hb_005736_060 0.087371116 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_000331_470 0.08858584 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
15 Hb_002534_150 0.0897613883 - - catalytic, putative [Ricinus communis]
16 Hb_038172_010 0.0914742163 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
17 Hb_001616_040 0.0915726931 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
18 Hb_000926_300 0.0921908026 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
19 Hb_128048_010 0.0931777643 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
20 Hb_000217_030 0.0932281907 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000342_100 Hb_000342_100 Hb_001140_370 Hb_001140_370 Hb_000342_100--Hb_001140_370 Hb_002893_050 Hb_002893_050 Hb_000342_100--Hb_002893_050 Hb_062226_140 Hb_062226_140 Hb_000342_100--Hb_062226_140 Hb_000610_050 Hb_000610_050 Hb_000342_100--Hb_000610_050 Hb_000003_080 Hb_000003_080 Hb_000342_100--Hb_000003_080 Hb_024071_020 Hb_024071_020 Hb_000342_100--Hb_024071_020 Hb_001140_370--Hb_024071_020 Hb_001016_030 Hb_001016_030 Hb_001140_370--Hb_001016_030 Hb_001157_020 Hb_001157_020 Hb_001140_370--Hb_001157_020 Hb_003918_010 Hb_003918_010 Hb_001140_370--Hb_003918_010 Hb_006059_050 Hb_006059_050 Hb_001140_370--Hb_006059_050 Hb_172426_040 Hb_172426_040 Hb_001140_370--Hb_172426_040 Hb_002893_050--Hb_000610_050 Hb_002893_050--Hb_024071_020 Hb_007875_030 Hb_007875_030 Hb_002893_050--Hb_007875_030 Hb_002893_050--Hb_001140_370 Hb_000217_030 Hb_000217_030 Hb_002893_050--Hb_000217_030 Hb_000207_400 Hb_000207_400 Hb_062226_140--Hb_000207_400 Hb_000331_470 Hb_000331_470 Hb_062226_140--Hb_000331_470 Hb_005391_040 Hb_005391_040 Hb_062226_140--Hb_005391_040 Hb_000465_390 Hb_000465_390 Hb_062226_140--Hb_000465_390 Hb_000111_380 Hb_000111_380 Hb_062226_140--Hb_000111_380 Hb_000610_050--Hb_024071_020 Hb_027472_040 Hb_027472_040 Hb_000610_050--Hb_027472_040 Hb_000610_050--Hb_007875_030 Hb_000796_210 Hb_000796_210 Hb_000610_050--Hb_000796_210 Hb_000116_440 Hb_000116_440 Hb_000003_080--Hb_000116_440 Hb_020581_010 Hb_020581_010 Hb_000003_080--Hb_020581_010 Hb_000272_020 Hb_000272_020 Hb_000003_080--Hb_000272_020 Hb_000220_220 Hb_000220_220 Hb_000003_080--Hb_000220_220 Hb_001842_100 Hb_001842_100 Hb_000003_080--Hb_001842_100 Hb_003126_050 Hb_003126_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.7884 35.1174 32.1427 44.5571 48.1146 52.6453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.9099 109.93 31.8252 49.7965 29.7448

CAGE analysis