Hb_000342_140

Information

Type -
Description -
Location Contig342: 173711-179979
Sequence    

Annotation

kegg
ID rcu:RCOM_0798420
description Vacuolar-processing enzyme precursor, putative (EC:3.4.22.34)
nr
ID XP_012077326.1
description PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
swissprot
ID P49043
description Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1
trembl
ID A0A067KPB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07696 PE=4 SV=1
Gene Ontology
ID GO:0008233
description vacuolar-processing enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35752: 173715-179959
cDNA
(Sanger)
(ID:Location)		 008_G19.ab1: 173722-175984 , 041_F02.ab1: 173715-175970 , 047_L09.ab1: 179577-179941 , 051_E11.ab1: 173715-176194 , 051_N23.ab1: 173715-177317

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_140 0.0 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
2 Hb_003637_020 0.1492714111 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006185_010 0.1507900319 - - hypothetical protein L484_013453 [Morus notabilis]
4 Hb_154538_010 0.1599803335 - - -
5 Hb_017159_010 0.1606957868 - - -
6 Hb_003082_040 0.165630977 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
7 Hb_001278_040 0.1668674975 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
8 Hb_004631_110 0.1719794169 - - ring finger protein, putative [Ricinus communis]
9 Hb_002685_030 0.1720119005 - - PREDICTED: protein SMG7L [Jatropha curcas]
10 Hb_158696_010 0.1744769419 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
11 Hb_001133_010 0.1745879484 - - conserved hypothetical protein [Ricinus communis]
12 Hb_103788_010 0.1765833474 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_000025_400 0.1778526964 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
14 Hb_160405_010 0.1782923084 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_005016_020 0.1786986821 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
16 Hb_000836_600 0.1822089456 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
17 Hb_093177_010 0.182935477 - - Phosphoprotein phosphatase [Theobroma cacao]
18 Hb_001754_060 0.1835746308 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
19 Hb_003371_210 0.1858386513 - - unnamed protein product [Vitis vinifera]
20 Hb_000200_170 0.186170498 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]

Gene co-expression network

sample Hb_000342_140 Hb_000342_140 Hb_003637_020 Hb_003637_020 Hb_000342_140--Hb_003637_020 Hb_006185_010 Hb_006185_010 Hb_000342_140--Hb_006185_010 Hb_154538_010 Hb_154538_010 Hb_000342_140--Hb_154538_010 Hb_017159_010 Hb_017159_010 Hb_000342_140--Hb_017159_010 Hb_003082_040 Hb_003082_040 Hb_000342_140--Hb_003082_040 Hb_001278_040 Hb_001278_040 Hb_000342_140--Hb_001278_040 Hb_185513_010 Hb_185513_010 Hb_003637_020--Hb_185513_010 Hb_103788_010 Hb_103788_010 Hb_003637_020--Hb_103788_010 Hb_000117_060 Hb_000117_060 Hb_003637_020--Hb_000117_060 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020 Hb_001818_060 Hb_001818_060 Hb_006185_010--Hb_001818_060 Hb_000836_600 Hb_000836_600 Hb_006185_010--Hb_000836_600 Hb_001133_010 Hb_001133_010 Hb_006185_010--Hb_001133_010 Hb_138585_100 Hb_138585_100 Hb_006185_010--Hb_138585_100 Hb_006185_010--Hb_103788_010 Hb_145317_010 Hb_145317_010 Hb_154538_010--Hb_145317_010 Hb_154538_010--Hb_017159_010 Hb_001178_040 Hb_001178_040 Hb_154538_010--Hb_001178_040 Hb_001754_060 Hb_001754_060 Hb_154538_010--Hb_001754_060 Hb_040747_010 Hb_040747_010 Hb_154538_010--Hb_040747_010 Hb_002250_050 Hb_002250_050 Hb_017159_010--Hb_002250_050 Hb_017159_010--Hb_001754_060 Hb_000200_170 Hb_000200_170 Hb_017159_010--Hb_000200_170 Hb_001255_010 Hb_001255_010 Hb_017159_010--Hb_001255_010 Hb_002849_070 Hb_002849_070 Hb_017159_010--Hb_002849_070 Hb_001178_080 Hb_001178_080 Hb_017159_010--Hb_001178_080 Hb_002213_040 Hb_002213_040 Hb_003082_040--Hb_002213_040 Hb_001004_120 Hb_001004_120 Hb_003082_040--Hb_001004_120 Hb_002685_030 Hb_002685_030 Hb_003082_040--Hb_002685_030 Hb_030312_010 Hb_030312_010 Hb_003082_040--Hb_030312_010 Hb_003506_020 Hb_003506_020 Hb_003082_040--Hb_003506_020 Hb_080451_010 Hb_080451_010 Hb_001278_040--Hb_080451_010 Hb_029977_050 Hb_029977_050 Hb_001278_040--Hb_029977_050 Hb_000457_140 Hb_000457_140 Hb_001278_040--Hb_000457_140 Hb_004162_120 Hb_004162_120 Hb_001278_040--Hb_004162_120 Hb_011716_110 Hb_011716_110 Hb_001278_040--Hb_011716_110 Hb_003371_230 Hb_003371_230 Hb_001278_040--Hb_003371_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.095 640.387 95.2385 592 61.1402 149.445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.077 13.8169 35.8112 155.231 101.287

CAGE analysis