Hb_000342_170

Information

Type -
Description -
Location Contig342: 206780-213514
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G075900g
description hypothetical protein
nr
ID XP_006578074.1
description PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
swissprot
ID -
description -
trembl
ID I1JTV5
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35756: 206897-213507 , PASA_asmbl_35757: 206779-213516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_170 0.0 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
2 Hb_000510_150 0.0857629783 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
3 Hb_132082_010 0.0885037697 - - hypothetical protein VITISV_030895 [Vitis vinifera]
4 Hb_000665_170 0.0898112761 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
5 Hb_003777_030 0.0942436956 - - Exocyst complex component, putative [Ricinus communis]
6 Hb_000860_060 0.0949456616 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
7 Hb_002687_200 0.0954138043 - - conserved hypothetical protein [Ricinus communis]
8 Hb_116349_120 0.0987708469 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_000422_080 0.1003921055 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
10 Hb_000007_090 0.1014096976 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
11 Hb_007545_010 0.101503423 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
12 Hb_002942_230 0.1019905288 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
13 Hb_004109_050 0.1063547746 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
14 Hb_000570_020 0.10785597 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
15 Hb_003540_080 0.1098414389 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_000300_510 0.1111379365 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
17 Hb_000395_110 0.111184621 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
18 Hb_000000_310 0.1112119291 - - metalloendopeptidase, putative [Ricinus communis]
19 Hb_000256_230 0.1113970688 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
20 Hb_000418_020 0.1114195092 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000342_170 Hb_000342_170 Hb_000510_150 Hb_000510_150 Hb_000342_170--Hb_000510_150 Hb_132082_010 Hb_132082_010 Hb_000342_170--Hb_132082_010 Hb_000665_170 Hb_000665_170 Hb_000342_170--Hb_000665_170 Hb_003777_030 Hb_003777_030 Hb_000342_170--Hb_003777_030 Hb_000860_060 Hb_000860_060 Hb_000342_170--Hb_000860_060 Hb_002687_200 Hb_002687_200 Hb_000342_170--Hb_002687_200 Hb_002301_030 Hb_002301_030 Hb_000510_150--Hb_002301_030 Hb_000035_220 Hb_000035_220 Hb_000510_150--Hb_000035_220 Hb_000510_150--Hb_000665_170 Hb_003540_080 Hb_003540_080 Hb_000510_150--Hb_003540_080 Hb_002942_230 Hb_002942_230 Hb_000510_150--Hb_002942_230 Hb_132082_010--Hb_003777_030 Hb_132082_010--Hb_000665_170 Hb_007545_010 Hb_007545_010 Hb_132082_010--Hb_007545_010 Hb_002739_120 Hb_002739_120 Hb_132082_010--Hb_002739_120 Hb_000926_340 Hb_000926_340 Hb_132082_010--Hb_000926_340 Hb_000256_230 Hb_000256_230 Hb_000665_170--Hb_000256_230 Hb_000665_170--Hb_003777_030 Hb_010672_020 Hb_010672_020 Hb_000665_170--Hb_010672_020 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_000665_170--Hb_007545_010 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030 Hb_001250_050 Hb_001250_050 Hb_003777_030--Hb_001250_050 Hb_003777_030--Hb_007545_010 Hb_000815_300 Hb_000815_300 Hb_003777_030--Hb_000815_300 Hb_003777_030--Hb_000256_230 Hb_002955_020 Hb_002955_020 Hb_000860_060--Hb_002955_020 Hb_000920_310 Hb_000920_310 Hb_000860_060--Hb_000920_310 Hb_000008_340 Hb_000008_340 Hb_000860_060--Hb_000008_340 Hb_000320_340 Hb_000320_340 Hb_000860_060--Hb_000320_340 Hb_000390_190 Hb_000390_190 Hb_000860_060--Hb_000390_190 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002687_200--Hb_002942_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93058 11.5448 16.8176 28.0949 2.82574 6.58014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.30589 4.06287 4.21946 9.4942 18.8864

CAGE analysis