Hb_000343_010

Information

Type -
Description -
Location Contig343: 3606-16541
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_316741
description F3F9.11
nr
ID AAF71798.1
description F3F9.11 [Arabidopsis thaliana]
swissprot
ID Q03666
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID M0U3L4
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35817: 8916-10260 , PASA_asmbl_35820: 15397-16631 , PASA_asmbl_35821: 16168-19659
cDNA
(Sanger)
(ID:Location)		 014_K02.ab1: 15507-16401 , 022_B01.ab1: 15397-16090 , 031_O10.ab1: 15397-16260 , 037_P12.ab1: 15397-16297 , 041_B12.ab1: 15397-16175 , 048_C12.ab1: 15510-16405 , 049_P06.ab1: 15926-16439 , 053_K17.ab1: 15397-16323

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_010 0.0 - - F3F9.11 [Arabidopsis thaliana]
2 Hb_006615_220 0.0895665864 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
3 Hb_000035_150 0.0990885115 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
4 Hb_007643_060 0.0991219615 - - -
5 Hb_007951_020 0.1071909702 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
6 Hb_004607_020 0.1090099345 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
7 Hb_003626_020 0.1094703039 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
8 Hb_001310_060 0.1111175153 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_005743_010 0.1112840263 - - RING/U-box superfamily protein, putative [Theobroma cacao]
10 Hb_000205_180 0.1119907201 - - lipoxygenase, putative [Ricinus communis]
11 Hb_008643_220 0.1135798988 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
12 Hb_002081_060 0.1167767759 - - cyclin d, putative [Ricinus communis]
13 Hb_001284_070 0.1216641773 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000664_080 0.1257378364 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
15 Hb_002170_060 0.1266101928 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
16 Hb_004316_080 0.1272089745 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
17 Hb_003992_130 0.1301062498 - - unnamed protein product [Vitis vinifera]
18 Hb_000954_040 0.1324734268 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
19 Hb_001934_040 0.1329046414 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
20 Hb_004832_010 0.1342376293 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000343_010 Hb_000343_010 Hb_006615_220 Hb_006615_220 Hb_000343_010--Hb_006615_220 Hb_000035_150 Hb_000035_150 Hb_000343_010--Hb_000035_150 Hb_007643_060 Hb_007643_060 Hb_000343_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_000343_010--Hb_007951_020 Hb_004607_020 Hb_004607_020 Hb_000343_010--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_000343_010--Hb_003626_020 Hb_006615_220--Hb_007643_060 Hb_006615_220--Hb_000035_150 Hb_005743_010 Hb_005743_010 Hb_006615_220--Hb_005743_010 Hb_006266_010 Hb_006266_010 Hb_006615_220--Hb_006266_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_000035_150--Hb_007643_060 Hb_003992_130 Hb_003992_130 Hb_000035_150--Hb_003992_130 Hb_000035_150--Hb_007951_020 Hb_000035_150--Hb_003626_020 Hb_004213_010 Hb_004213_010 Hb_000035_150--Hb_004213_010 Hb_007643_060--Hb_007951_020 Hb_012691_010 Hb_012691_010 Hb_007643_060--Hb_012691_010 Hb_007643_060--Hb_005743_010 Hb_007951_020--Hb_003626_020 Hb_007951_020--Hb_012691_010 Hb_007951_020--Hb_005743_010 Hb_001284_070 Hb_001284_070 Hb_004607_020--Hb_001284_070 Hb_004607_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_004607_020--Hb_080147_070 Hb_004607_020--Hb_003626_020 Hb_002700_030 Hb_002700_030 Hb_004607_020--Hb_002700_030 Hb_001369_550 Hb_001369_550 Hb_004607_020--Hb_001369_550 Hb_000205_180 Hb_000205_180 Hb_003626_020--Hb_000205_180 Hb_003626_020--Hb_003992_130 Hb_027337_010 Hb_027337_010 Hb_003626_020--Hb_027337_010 Hb_003626_020--Hb_001310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.940094 12.195 163.982 40.8623 0.213562 0.201149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.612299 0.854166 1.40443 36.8846 31.7282

CAGE analysis