Hb_000343_030

Information

Type -
Description -
Location Contig343: 17352-35007
Sequence    

Annotation

kegg
ID rcu:RCOM_1495090
description hypothetical protein
nr
ID XP_012073340.1
description PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06270 PE=4 SV=1
Gene Ontology
ID GO:0006464
description PREDICTED: uncharacterized protein LOC105634976

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35820: 15397-16631 , PASA_asmbl_35821: 16168-19659 , PASA_asmbl_35823: 23747-24854 , PASA_asmbl_35824: 25427-25839 , PASA_asmbl_35826: 34978-35178
cDNA
(Sanger)
(ID:Location)		 014_K02.ab1: 15507-16401 , 019_C17.ab1: 34978-35178 , 048_C12.ab1: 15510-16405 , 049_P06.ab1: 15926-16439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_030 0.0 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
2 Hb_000300_440 0.0654311153 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
3 Hb_004218_030 0.0658874036 - - conserved hypothetical protein [Ricinus communis]
4 Hb_100215_010 0.074139157 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
5 Hb_003952_150 0.080544434 - - PREDICTED: cactin [Jatropha curcas]
6 Hb_001621_130 0.0817682774 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
7 Hb_000920_210 0.0835796212 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
8 Hb_000505_020 0.0855715532 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
9 Hb_000327_340 0.0871344897 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
10 Hb_002028_170 0.0883469091 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
11 Hb_000109_100 0.0885933968 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
12 Hb_011716_020 0.0897907333 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
13 Hb_002107_070 0.0908646742 - - hypothetical protein RCOM_1598630 [Ricinus communis]
14 Hb_000033_030 0.0919665357 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
15 Hb_011173_030 0.0921174073 - - pumilio, putative [Ricinus communis]
16 Hb_005143_030 0.0939558852 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
17 Hb_002974_060 0.0940289718 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
18 Hb_002329_040 0.0953583275 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
19 Hb_000446_120 0.0969166242 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
20 Hb_003362_070 0.0969229924 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_030 Hb_000343_030 Hb_000300_440 Hb_000300_440 Hb_000343_030--Hb_000300_440 Hb_004218_030 Hb_004218_030 Hb_000343_030--Hb_004218_030 Hb_100215_010 Hb_100215_010 Hb_000343_030--Hb_100215_010 Hb_003952_150 Hb_003952_150 Hb_000343_030--Hb_003952_150 Hb_001621_130 Hb_001621_130 Hb_000343_030--Hb_001621_130 Hb_000920_210 Hb_000920_210 Hb_000343_030--Hb_000920_210 Hb_000109_100 Hb_000109_100 Hb_000300_440--Hb_000109_100 Hb_000300_440--Hb_003952_150 Hb_000300_440--Hb_100215_010 Hb_001172_010 Hb_001172_010 Hb_000300_440--Hb_001172_010 Hb_007307_020 Hb_007307_020 Hb_000300_440--Hb_007307_020 Hb_001268_350 Hb_001268_350 Hb_004218_030--Hb_001268_350 Hb_011457_070 Hb_011457_070 Hb_004218_030--Hb_011457_070 Hb_002784_110 Hb_002784_110 Hb_004218_030--Hb_002784_110 Hb_000327_340 Hb_000327_340 Hb_004218_030--Hb_000327_340 Hb_005143_030 Hb_005143_030 Hb_004218_030--Hb_005143_030 Hb_000983_150 Hb_000983_150 Hb_100215_010--Hb_000983_150 Hb_004689_050 Hb_004689_050 Hb_100215_010--Hb_004689_050 Hb_003362_070 Hb_003362_070 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_003952_150--Hb_000920_210 Hb_003952_150--Hb_003362_070 Hb_010381_060 Hb_010381_060 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200 Hb_010053_030 Hb_010053_030 Hb_001621_130--Hb_010053_030 Hb_000369_130 Hb_000369_130 Hb_001621_130--Hb_000369_130 Hb_006478_060 Hb_006478_060 Hb_001621_130--Hb_006478_060 Hb_000923_080 Hb_000923_080 Hb_001621_130--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_001621_130--Hb_000505_020 Hb_001623_480 Hb_001623_480 Hb_000920_210--Hb_001623_480 Hb_000033_030 Hb_000033_030 Hb_000920_210--Hb_000033_030 Hb_000190_120 Hb_000190_120 Hb_000920_210--Hb_000190_120 Hb_000920_210--Hb_010381_060 Hb_025477_040 Hb_025477_040 Hb_000920_210--Hb_025477_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.95411 5.45056 1.80104 3.69096 7.65108 8.28481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10593 2.23972 3.87621 8.68624 4.32346

CAGE analysis