Hb_000343_050

Information

Type -
Description -
Location Contig343: 39873-41127
Sequence    

Annotation

kegg
ID rcu:RCOM_1495210
description hypothetical protein
nr
ID XP_002516077.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQQ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1495210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35829: 39982-41073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001677_170 0.0772240116 - - hypothetical protein M569_03661, partial [Genlisea aurea]
3 Hb_006188_020 0.0892234596 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
4 Hb_005890_010 0.0904272024 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
5 Hb_001926_070 0.0936886474 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
6 Hb_032731_010 0.0957151568 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
7 Hb_111997_010 0.1040338524 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
8 Hb_060534_010 0.1042021394 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
9 Hb_005227_030 0.1050351725 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
10 Hb_074966_010 0.1050435298 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_001606_010 0.1058517079 - - kinase, putative [Ricinus communis]
12 Hb_001926_020 0.1069868595 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
13 Hb_000890_170 0.1087338182 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
14 Hb_005888_050 0.1088019972 - - ATP binding protein, putative [Ricinus communis]
15 Hb_004117_380 0.1122358228 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
16 Hb_000732_300 0.115021615 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
17 Hb_000413_190 0.1159362539 - - PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]
18 Hb_000483_470 0.1169454898 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_004017_030 0.117753392 - - PREDICTED: 2-hydroxyisoflavanone dehydratase-like [Jatropha curcas]
20 Hb_000236_130 0.1193096573 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_050 Hb_000343_050 Hb_001677_170 Hb_001677_170 Hb_000343_050--Hb_001677_170 Hb_006188_020 Hb_006188_020 Hb_000343_050--Hb_006188_020 Hb_005890_010 Hb_005890_010 Hb_000343_050--Hb_005890_010 Hb_001926_070 Hb_001926_070 Hb_000343_050--Hb_001926_070 Hb_032731_010 Hb_032731_010 Hb_000343_050--Hb_032731_010 Hb_111997_010 Hb_111997_010 Hb_000343_050--Hb_111997_010 Hb_001677_170--Hb_001926_070 Hb_001677_170--Hb_111997_010 Hb_000031_320 Hb_000031_320 Hb_001677_170--Hb_000031_320 Hb_001677_170--Hb_006188_020 Hb_001606_010 Hb_001606_010 Hb_001677_170--Hb_001606_010 Hb_006188_020--Hb_111997_010 Hb_074966_010 Hb_074966_010 Hb_006188_020--Hb_074966_010 Hb_001926_020 Hb_001926_020 Hb_006188_020--Hb_001926_020 Hb_005888_050 Hb_005888_050 Hb_006188_020--Hb_005888_050 Hb_000116_160 Hb_000116_160 Hb_005890_010--Hb_000116_160 Hb_005488_210 Hb_005488_210 Hb_005890_010--Hb_005488_210 Hb_005890_010--Hb_001926_070 Hb_004117_380 Hb_004117_380 Hb_005890_010--Hb_004117_380 Hb_005890_010--Hb_032731_010 Hb_001926_070--Hb_001606_010 Hb_000007_330 Hb_000007_330 Hb_001926_070--Hb_000007_330 Hb_001926_070--Hb_032731_010 Hb_000890_170 Hb_000890_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_059318_010 Hb_059318_010 Hb_032731_010--Hb_059318_010 Hb_032731_010--Hb_074966_010 Hb_032731_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_032731_010--Hb_003777_120 Hb_032731_010--Hb_001606_010 Hb_111997_010--Hb_074966_010 Hb_111997_010--Hb_001606_010 Hb_111997_010--Hb_059318_010 Hb_111997_010--Hb_001926_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0230312 5.25772 15.1116 4.65038 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0415097 0.0762368 0.217184 9.99648

CAGE analysis