Hb_000343_100

Information

Type -
Description -
Location Contig343: 59129-69154
Sequence    

Annotation

kegg
ID rcu:RCOM_0980890
description regulator of telomere elongation helicase 1 rtel1, putative
nr
ID XP_012073335.1
description PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
swissprot
ID B3MSG8
description Regulator of telomere elongation helicase 1 homolog OS=Drosophila ananassae GN=GF20802 PE=3 SV=1
trembl
ID A0A067KLX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06262 PE=4 SV=1
Gene Ontology
ID GO:0005634
description regulator of telomere elongation helicase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35833: 62123-62389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_100 0.0 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
2 Hb_003813_120 0.1469702138 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000384_050 0.1554781174 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
4 Hb_004143_120 0.1643340764 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
5 Hb_000181_020 0.1648981042 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
6 Hb_000347_110 0.1653300161 - - BnaA05g25330D [Brassica napus]
7 Hb_000098_310 0.187184989 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
8 Hb_011360_060 0.1903885505 - - glycogen phosphorylase, putative [Ricinus communis]
9 Hb_003517_020 0.1911342625 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
10 Hb_182680_010 0.1951137958 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
11 Hb_003428_100 0.1954780636 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_000094_370 0.1968350484 - - -
13 Hb_005389_190 0.1980445404 - - glutamate receptor 2 plant, putative [Ricinus communis]
14 Hb_000227_040 0.1999457534 - - Stem-specific protein TSJT1, putative [Ricinus communis]
15 Hb_000702_060 0.2032448603 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008749_090 0.2059167214 - - hypothetical protein CICLE_v10017161mg [Citrus clementina]
17 Hb_000928_040 0.2073188408 - - cytochrome P450, putative [Ricinus communis]
18 Hb_003576_050 0.2108261563 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
19 Hb_006846_120 0.2121376148 - - Succinate/fumarate mitochondrial transporter, putative [Ricinus communis]
20 Hb_003626_040 0.2122517058 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_100 Hb_000343_100 Hb_003813_120 Hb_003813_120 Hb_000343_100--Hb_003813_120 Hb_000384_050 Hb_000384_050 Hb_000343_100--Hb_000384_050 Hb_004143_120 Hb_004143_120 Hb_000343_100--Hb_004143_120 Hb_000181_020 Hb_000181_020 Hb_000343_100--Hb_000181_020 Hb_000347_110 Hb_000347_110 Hb_000343_100--Hb_000347_110 Hb_000098_310 Hb_000098_310 Hb_000343_100--Hb_000098_310 Hb_003813_120--Hb_000347_110 Hb_003626_040 Hb_003626_040 Hb_003813_120--Hb_003626_040 Hb_006717_070 Hb_006717_070 Hb_003813_120--Hb_006717_070 Hb_000227_040 Hb_000227_040 Hb_003813_120--Hb_000227_040 Hb_000702_060 Hb_000702_060 Hb_003813_120--Hb_000702_060 Hb_001500_070 Hb_001500_070 Hb_003813_120--Hb_001500_070 Hb_002110_260 Hb_002110_260 Hb_000384_050--Hb_002110_260 Hb_002043_010 Hb_002043_010 Hb_000384_050--Hb_002043_010 Hb_003517_020 Hb_003517_020 Hb_000384_050--Hb_003517_020 Hb_012565_080 Hb_012565_080 Hb_000384_050--Hb_012565_080 Hb_102011_010 Hb_102011_010 Hb_000384_050--Hb_102011_010 Hb_182680_010 Hb_182680_010 Hb_004143_120--Hb_182680_010 Hb_003428_100 Hb_003428_100 Hb_004143_120--Hb_003428_100 Hb_005389_190 Hb_005389_190 Hb_004143_120--Hb_005389_190 Hb_002233_040 Hb_002233_040 Hb_004143_120--Hb_002233_040 Hb_004143_120--Hb_000181_020 Hb_004041_100 Hb_004041_100 Hb_000181_020--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000181_020--Hb_000625_030 Hb_000181_020--Hb_000347_110 Hb_011360_060 Hb_011360_060 Hb_000181_020--Hb_011360_060 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_000181_020--Hb_001500_070 Hb_000173_260 Hb_000173_260 Hb_000347_110--Hb_000173_260 Hb_000347_110--Hb_004041_100 Hb_000347_110--Hb_011360_060 Hb_000347_110--Hb_003626_040 Hb_009823_010 Hb_009823_010 Hb_000098_310--Hb_009823_010 Hb_011200_020 Hb_011200_020 Hb_000098_310--Hb_011200_020 Hb_003576_050 Hb_003576_050 Hb_000098_310--Hb_003576_050 Hb_000181_160 Hb_000181_160 Hb_000098_310--Hb_000181_160 Hb_001408_050 Hb_001408_050 Hb_000098_310--Hb_001408_050 Hb_031042_030 Hb_031042_030 Hb_000098_310--Hb_031042_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.239349 0.914288 0.177241 0.67019 0.37247 0.313375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.256757 0.279029 0.239866 4.61363 1.0704

CAGE analysis