Hb_000343_120

Information

Type -
Description -
Location Contig343: 87857-90057
Sequence    

Annotation

kegg
ID rcu:RCOM_0980860
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012073332.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
swissprot
ID Q9LW84
description Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
trembl
ID A0A067KZG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06260 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat (ppr-like) superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35837: 87477-91544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
2 Hb_000166_130 0.0422650498 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000035_290 0.0509921124 - - RNA recognition motif-containing family protein [Populus trichocarpa]
4 Hb_000028_280 0.0513961645 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
5 Hb_009545_100 0.0554212362 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
6 Hb_001199_100 0.0561957545 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
7 Hb_003029_110 0.0596826317 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
8 Hb_025194_040 0.0620868384 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
9 Hb_004117_310 0.0677663844 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
10 Hb_000190_120 0.068118576 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
11 Hb_001195_320 0.0688284301 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
12 Hb_000796_030 0.0699821156 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
13 Hb_002740_110 0.0700741803 - - PREDICTED: phytochrome A [Jatropha curcas]
14 Hb_123352_020 0.0705899332 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
15 Hb_001341_170 0.071936097 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
16 Hb_001550_060 0.0731708875 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
17 Hb_002053_080 0.0733298597 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21300 [Jatropha curcas]
18 Hb_003253_040 0.0743004639 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_000225_040 0.074775028 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
20 Hb_000457_260 0.074897357 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_120 Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_001199_100 Hb_001199_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_000166_130--Hb_003029_110 Hb_001195_320 Hb_001195_320 Hb_000166_130--Hb_001195_320 Hb_000166_130--Hb_000035_290 Hb_003371_110 Hb_003371_110 Hb_000166_130--Hb_003371_110 Hb_000166_130--Hb_001199_100 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110 Hb_002740_110 Hb_002740_110 Hb_000028_280--Hb_002740_110 Hb_004143_130 Hb_004143_130 Hb_000028_280--Hb_004143_130 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_003253_040 Hb_003253_040 Hb_000028_280--Hb_003253_040 Hb_004994_220 Hb_004994_220 Hb_000028_280--Hb_004994_220 Hb_002025_020 Hb_002025_020 Hb_009545_100--Hb_002025_020 Hb_000347_070 Hb_000347_070 Hb_009545_100--Hb_000347_070 Hb_000116_500 Hb_000116_500 Hb_009545_100--Hb_000116_500 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040 Hb_001199_100--Hb_003253_040 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003029_110--Hb_003371_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78644 2.61265 0.87504 1.59668 2.69773 3.03604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81382 1.80547 2.12109 2.29108 2.00034

CAGE analysis