Hb_000343_130

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig343: 92363-93562
Sequence    

Annotation

kegg
ID rcu:RCOM_0980850
description transcription factor, putative
nr
ID XP_012073331.1
description PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067KQH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06259 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor asil1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35839: 92048-94360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_130 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
2 Hb_000635_220 0.0652234516 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
3 Hb_016901_010 0.0786324426 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
4 Hb_007747_200 0.0790892254 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
5 Hb_000317_280 0.0823654397 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
6 Hb_002006_090 0.086574846 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
7 Hb_000111_360 0.0890512208 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003687_100 0.0902664964 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
9 Hb_002218_010 0.0905343375 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
10 Hb_008695_210 0.0941438474 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
11 Hb_006816_130 0.0952202931 - - PREDICTED: uncharacterized protein LOC105647421 [Jatropha curcas]
12 Hb_000203_160 0.0955179065 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
13 Hb_000805_020 0.0957686553 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
14 Hb_006915_050 0.098033459 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
15 Hb_010172_050 0.1011052125 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
16 Hb_001975_160 0.1013559955 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002496_040 0.1017396959 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
18 Hb_163145_020 0.1023331722 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
19 Hb_001454_190 0.1043953819 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
20 Hb_002016_110 0.1050146134 - - transducin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000343_130 Hb_000343_130 Hb_000635_220 Hb_000635_220 Hb_000343_130--Hb_000635_220 Hb_016901_010 Hb_016901_010 Hb_000343_130--Hb_016901_010 Hb_007747_200 Hb_007747_200 Hb_000343_130--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000343_130--Hb_000317_280 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360 Hb_003687_100 Hb_003687_100 Hb_000635_220--Hb_003687_100 Hb_163145_020 Hb_163145_020 Hb_000635_220--Hb_163145_020 Hb_000635_220--Hb_007747_200 Hb_000635_220--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_000635_220--Hb_006846_110 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_007747_200--Hb_000317_280 Hb_007747_200--Hb_006846_110 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_007747_200--Hb_016901_010 Hb_001338_040 Hb_001338_040 Hb_000317_280--Hb_001338_040 Hb_001969_090 Hb_001969_090 Hb_000317_280--Hb_001969_090 Hb_000317_280--Hb_006846_110 Hb_001329_300 Hb_001329_300 Hb_002006_090--Hb_001329_300 Hb_000614_230 Hb_000614_230 Hb_002006_090--Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_002006_090--Hb_008695_210 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_000754_040 Hb_000754_040 Hb_000111_360--Hb_000754_040 Hb_000111_360--Hb_006915_050 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_000111_360--Hb_002006_090 Hb_001277_330 Hb_001277_330 Hb_000111_360--Hb_001277_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.1791 28.241 6.95587 12.4969 23.0804 33.4745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.895 38.9662 71.7753 31.4618 19.88

CAGE analysis