Hb_000343_140

Information

Type -
Description -
Location Contig343: 110408-113852
Sequence    

Annotation

kegg
ID rcu:RCOM_0980540
description hypothetical protein
nr
ID XP_012073329.1
description PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06258 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35840: 110737-110993 , PASA_asmbl_35843: 112446-113520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_140 0.0 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
2 Hb_001377_280 0.1247314519 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
3 Hb_000521_160 0.1419484298 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004032_030 0.1433192358 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
5 Hb_003567_030 0.1564500254 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
6 Hb_024879_010 0.1568375867 - - unknown [Glycine max]
7 Hb_183610_010 0.1578365472 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
8 Hb_000172_510 0.1628784902 - - hypothetical protein B456_007G243100 [Gossypium raimondii]
9 Hb_002660_150 0.1705905973 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
10 Hb_005695_120 0.1718356221 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
11 Hb_001153_150 0.1723424258 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
12 Hb_000307_140 0.173759328 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
13 Hb_000249_070 0.1739538573 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
14 Hb_002298_030 0.1749146171 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
15 Hb_000482_020 0.1759363413 - - cell wall invertase [Manihot esculenta]
16 Hb_000359_090 0.1772890567 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
17 Hb_000362_180 0.1792005578 - - Pdap1 [Gossypium arboreum]
18 Hb_004117_120 0.1816896784 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
19 Hb_059480_010 0.1828356293 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
20 Hb_002615_040 0.1829306708 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]

Gene co-expression network

sample Hb_000343_140 Hb_000343_140 Hb_001377_280 Hb_001377_280 Hb_000343_140--Hb_001377_280 Hb_000521_160 Hb_000521_160 Hb_000343_140--Hb_000521_160 Hb_004032_030 Hb_004032_030 Hb_000343_140--Hb_004032_030 Hb_003567_030 Hb_003567_030 Hb_000343_140--Hb_003567_030 Hb_024879_010 Hb_024879_010 Hb_000343_140--Hb_024879_010 Hb_183610_010 Hb_183610_010 Hb_000343_140--Hb_183610_010 Hb_033354_020 Hb_033354_020 Hb_001377_280--Hb_033354_020 Hb_000311_040 Hb_000311_040 Hb_001377_280--Hb_000311_040 Hb_001377_280--Hb_183610_010 Hb_004453_070 Hb_004453_070 Hb_001377_280--Hb_004453_070 Hb_004117_120 Hb_004117_120 Hb_001377_280--Hb_004117_120 Hb_002518_030 Hb_002518_030 Hb_000521_160--Hb_002518_030 Hb_012796_020 Hb_012796_020 Hb_000521_160--Hb_012796_020 Hb_002298_030 Hb_002298_030 Hb_000521_160--Hb_002298_030 Hb_003929_270 Hb_003929_270 Hb_000521_160--Hb_003929_270 Hb_000167_080 Hb_000167_080 Hb_000521_160--Hb_000167_080 Hb_000453_160 Hb_000453_160 Hb_000521_160--Hb_000453_160 Hb_004032_030--Hb_002298_030 Hb_005054_080 Hb_005054_080 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_004032_030--Hb_003929_270 Hb_002105_100 Hb_002105_100 Hb_003567_030--Hb_002105_100 Hb_171900_060 Hb_171900_060 Hb_003567_030--Hb_171900_060 Hb_003567_030--Hb_002298_030 Hb_000025_630 Hb_000025_630 Hb_003567_030--Hb_000025_630 Hb_000510_300 Hb_000510_300 Hb_003567_030--Hb_000510_300 Hb_003567_030--Hb_012796_020 Hb_000245_080 Hb_000245_080 Hb_024879_010--Hb_000245_080 Hb_074715_010 Hb_074715_010 Hb_024879_010--Hb_074715_010 Hb_001146_020 Hb_001146_020 Hb_024879_010--Hb_001146_020 Hb_003910_010 Hb_003910_010 Hb_024879_010--Hb_003910_010 Hb_004450_050 Hb_004450_050 Hb_024879_010--Hb_004450_050 Hb_183610_010--Hb_004117_120 Hb_005183_170 Hb_005183_170 Hb_183610_010--Hb_005183_170 Hb_000984_310 Hb_000984_310 Hb_183610_010--Hb_000984_310 Hb_001217_040 Hb_001217_040 Hb_183610_010--Hb_001217_040 Hb_000291_160 Hb_000291_160 Hb_183610_010--Hb_000291_160 Hb_000482_020 Hb_000482_020 Hb_183610_010--Hb_000482_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0447 10.5128 11.6303 50.5669 7.93389 16.1811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1436 13.0093 18.1004 5.77762 3.99504

CAGE analysis