Hb_000343_150

Information

Type -
Description -
Location Contig343: 128105-132702
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17980g
description POPTRDRAFT_181051; hypothetical protein
nr
ID XP_012073328.1
description PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
swissprot
ID Q9M7J4
description MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum GN=MFP1-1 PE=2 SV=1
trembl
ID A0A067KLV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06257 PE=4 SV=1
Gene Ontology
ID GO:0009534
description mar-binding filament-like protein 1-1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35844: 128102-131306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_150 0.0 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
2 Hb_001558_060 0.0993581023 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
3 Hb_008165_030 0.1079497258 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
4 Hb_013405_150 0.1091946258 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
5 Hb_004236_010 0.1096061637 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
6 Hb_000723_110 0.1098824535 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
7 Hb_003605_050 0.1107777392 - - protein with unknown function [Ricinus communis]
8 Hb_000189_630 0.1117890774 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
9 Hb_000500_300 0.1132776274 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
10 Hb_000102_050 0.113665196 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
11 Hb_000207_200 0.1137763598 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
12 Hb_001005_020 0.1140558925 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
13 Hb_023226_070 0.1157234778 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004032_230 0.1174308667 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
15 Hb_004267_060 0.1183348317 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_005333_140 0.1184120568 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
17 Hb_006132_040 0.1194407796 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
18 Hb_005834_040 0.1196721894 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
19 Hb_000589_190 0.1209553016 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
20 Hb_000139_220 0.1216409015 - - leucine rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000343_150 Hb_000343_150 Hb_001558_060 Hb_001558_060 Hb_000343_150--Hb_001558_060 Hb_008165_030 Hb_008165_030 Hb_000343_150--Hb_008165_030 Hb_013405_150 Hb_013405_150 Hb_000343_150--Hb_013405_150 Hb_004236_010 Hb_004236_010 Hb_000343_150--Hb_004236_010 Hb_000723_110 Hb_000723_110 Hb_000343_150--Hb_000723_110 Hb_003605_050 Hb_003605_050 Hb_000343_150--Hb_003605_050 Hb_023226_070 Hb_023226_070 Hb_001558_060--Hb_023226_070 Hb_000375_290 Hb_000375_290 Hb_001558_060--Hb_000375_290 Hb_001558_060--Hb_008165_030 Hb_003992_180 Hb_003992_180 Hb_001558_060--Hb_003992_180 Hb_000579_190 Hb_000579_190 Hb_001558_060--Hb_000579_190 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_002903_140 Hb_002903_140 Hb_008165_030--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_008165_030--Hb_030545_030 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_096819_010 Hb_096819_010 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_000077_120 Hb_000077_120 Hb_013405_150--Hb_000077_120 Hb_000890_010 Hb_000890_010 Hb_013405_150--Hb_000890_010 Hb_044155_010 Hb_044155_010 Hb_013405_150--Hb_044155_010 Hb_006132_040 Hb_006132_040 Hb_013405_150--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_013405_150--Hb_000139_220 Hb_000645_130 Hb_000645_130 Hb_004236_010--Hb_000645_130 Hb_009302_030 Hb_009302_030 Hb_004236_010--Hb_009302_030 Hb_000500_300 Hb_000500_300 Hb_004236_010--Hb_000500_300 Hb_004659_090 Hb_004659_090 Hb_004236_010--Hb_004659_090 Hb_000189_630 Hb_000189_630 Hb_004236_010--Hb_000189_630 Hb_007283_030 Hb_007283_030 Hb_004236_010--Hb_007283_030 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000094_090 Hb_000094_090 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230 Hb_004943_030 Hb_004943_030 Hb_003605_050--Hb_004943_030 Hb_000227_270 Hb_000227_270 Hb_003605_050--Hb_000227_270 Hb_003605_050--Hb_023226_070 Hb_000115_340 Hb_000115_340 Hb_003605_050--Hb_000115_340 Hb_003605_050--Hb_008165_030 Hb_003605_050--Hb_002903_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24169 12.2031 15.9959 5.06608 8.2448 3.72067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51508 2.7283 5.68441 6.22613 5.76724

CAGE analysis