Hb_000343_180

Information

Type -
Description -
Location Contig343: 155746-158011
Sequence    

Annotation

kegg
ID ssl:SS1G_10117
description hypothetical protein
nr
ID ADA68830.1
description NDWp3 [Podospora anserina]
swissprot
ID Q8YRI1
description Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1
trembl
ID D5G228
description NDWp3 (Fragment) OS=Podospora anserina PE=4 SV=1
Gene Ontology
ID GO:0005515
description coatomer subunit beta -2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35849: 156331-158011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_180 0.0 - - NDWp3 [Podospora anserina]
2 Hb_000802_110 0.141725383 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
3 Hb_002110_240 0.1722810943 - - clathrin assembly protein, putative [Ricinus communis]
4 Hb_008173_030 0.1760430659 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
5 Hb_000732_250 0.1784042418 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
6 Hb_000975_360 0.1946925074 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007558_020 0.1954919925 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
8 Hb_023344_080 0.1967607376 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
9 Hb_021888_050 0.197234511 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
10 Hb_002035_110 0.1974615937 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
11 Hb_002341_020 0.1976821885 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
12 Hb_000948_080 0.2046757851 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
13 Hb_004631_210 0.2071338056 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
14 Hb_009233_030 0.2073389406 - - protein binding protein, putative [Ricinus communis]
15 Hb_002686_120 0.2082667778 - - short-chain type dehydrogenase, putative [Ricinus communis]
16 Hb_001825_060 0.2094951422 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
17 Hb_010050_050 0.2115513644 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
18 Hb_004724_210 0.2121898722 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000649_240 0.2132672835 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
20 Hb_001894_090 0.2140797069 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_180 Hb_000343_180 Hb_000802_110 Hb_000802_110 Hb_000343_180--Hb_000802_110 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_168707_040 Hb_168707_040 Hb_000802_110--Hb_168707_040 Hb_000672_150 Hb_000672_150 Hb_000802_110--Hb_000672_150 Hb_014613_010 Hb_014613_010 Hb_000802_110--Hb_014613_010 Hb_002686_120 Hb_002686_120 Hb_000802_110--Hb_002686_120 Hb_001894_090 Hb_001894_090 Hb_000802_110--Hb_001894_090 Hb_002205_010 Hb_002205_010 Hb_002110_240--Hb_002205_010 Hb_002110_240--Hb_008173_030 Hb_000256_130 Hb_000256_130 Hb_002110_240--Hb_000256_130 Hb_020400_040 Hb_020400_040 Hb_002110_240--Hb_020400_040 Hb_009233_030 Hb_009233_030 Hb_002110_240--Hb_009233_030 Hb_000649_240 Hb_000649_240 Hb_008173_030--Hb_000649_240 Hb_000868_100 Hb_000868_100 Hb_008173_030--Hb_000868_100 Hb_008173_030--Hb_002205_010 Hb_000638_210 Hb_000638_210 Hb_008173_030--Hb_000638_210 Hb_000987_060 Hb_000987_060 Hb_000732_250--Hb_000987_060 Hb_000345_200 Hb_000345_200 Hb_000732_250--Hb_000345_200 Hb_034688_020 Hb_034688_020 Hb_000732_250--Hb_034688_020 Hb_001189_140 Hb_001189_140 Hb_000732_250--Hb_001189_140 Hb_001825_060 Hb_001825_060 Hb_000732_250--Hb_001825_060 Hb_001856_200 Hb_001856_200 Hb_000732_250--Hb_001856_200 Hb_115241_010 Hb_115241_010 Hb_000975_360--Hb_115241_010 Hb_002042_130 Hb_002042_130 Hb_000975_360--Hb_002042_130 Hb_000465_230 Hb_000465_230 Hb_000975_360--Hb_000465_230 Hb_021888_050 Hb_021888_050 Hb_000975_360--Hb_021888_050 Hb_000975_360--Hb_001189_140 Hb_001894_050 Hb_001894_050 Hb_000975_360--Hb_001894_050 Hb_000394_110 Hb_000394_110 Hb_007558_020--Hb_000394_110 Hb_001771_080 Hb_001771_080 Hb_007558_020--Hb_001771_080 Hb_002849_140 Hb_002849_140 Hb_007558_020--Hb_002849_140 Hb_006907_080 Hb_006907_080 Hb_007558_020--Hb_006907_080 Hb_140049_010 Hb_140049_010 Hb_007558_020--Hb_140049_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57583 55.7375 12.8906 9.91104 2.56343 1.68245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1696 29.3102 29.6348 18.4574 1.8692

CAGE analysis