Hb_000343_190

Information

Type -
Description -
Location Contig343: 161864-173619
Sequence    

Annotation

kegg
ID rcu:RCOM_0980380
description coatomer beta subunit, putative (EC:2.7.11.7)
nr
ID XP_012073320.1
description PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
swissprot
ID Q9C827
description Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1
trembl
ID B9SQC0
description Coatomer beta subunit, putative OS=Ricinus communis GN=RCOM_0980380 PE=4 SV=1
Gene Ontology
ID GO:0030117
description coatomer subunit beta -2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35850: 161877-173608 , PASA_asmbl_35851: 166890-167363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_190 0.0 - - PREDICTED: coatomer subunit beta'-2 isoform X1 [Jatropha curcas]
2 Hb_000021_040 0.089222177 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
3 Hb_000768_190 0.0962532538 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_005211_100 0.1003693996 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
5 Hb_009535_020 0.1017059548 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
6 Hb_004767_090 0.101954407 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
7 Hb_000059_150 0.1036724162 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 2 [Theobroma cacao]
8 Hb_000441_180 0.1042505613 - - Early endosome antigen, putative [Ricinus communis]
9 Hb_007192_080 0.1045198136 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
10 Hb_000048_140 0.1065291439 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
11 Hb_028639_010 0.1071635868 - - transporter, putative [Ricinus communis]
12 Hb_000600_070 0.1090362604 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
13 Hb_000347_130 0.109732087 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
14 Hb_004994_040 0.1100827318 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
15 Hb_003406_040 0.1104742201 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_003966_030 0.1112938214 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
17 Hb_008595_010 0.1118120821 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
18 Hb_002200_130 0.113470802 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
19 Hb_058643_010 0.1147987034 - - hydrolase, putative [Ricinus communis]
20 Hb_002587_020 0.1154499875 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000343_190 Hb_000343_190 Hb_000021_040 Hb_000021_040 Hb_000343_190--Hb_000021_040 Hb_000768_190 Hb_000768_190 Hb_000343_190--Hb_000768_190 Hb_005211_100 Hb_005211_100 Hb_000343_190--Hb_005211_100 Hb_009535_020 Hb_009535_020 Hb_000343_190--Hb_009535_020 Hb_004767_090 Hb_004767_090 Hb_000343_190--Hb_004767_090 Hb_000059_150 Hb_000059_150 Hb_000343_190--Hb_000059_150 Hb_022250_110 Hb_022250_110 Hb_000021_040--Hb_022250_110 Hb_000037_110 Hb_000037_110 Hb_000021_040--Hb_000037_110 Hb_000021_040--Hb_000768_190 Hb_000209_070 Hb_000209_070 Hb_000021_040--Hb_000209_070 Hb_001473_090 Hb_001473_090 Hb_000021_040--Hb_001473_090 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_000768_190--Hb_000037_110 Hb_003544_100 Hb_003544_100 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_006915_060 Hb_006915_060 Hb_000768_190--Hb_006915_060 Hb_002783_240 Hb_002783_240 Hb_005211_100--Hb_002783_240 Hb_103012_010 Hb_103012_010 Hb_005211_100--Hb_103012_010 Hb_000116_500 Hb_000116_500 Hb_005211_100--Hb_000116_500 Hb_001488_410 Hb_001488_410 Hb_005211_100--Hb_001488_410 Hb_000608_320 Hb_000608_320 Hb_005211_100--Hb_000608_320 Hb_004102_140 Hb_004102_140 Hb_005211_100--Hb_004102_140 Hb_000600_070 Hb_000600_070 Hb_009535_020--Hb_000600_070 Hb_000023_190 Hb_000023_190 Hb_009535_020--Hb_000023_190 Hb_028487_110 Hb_028487_110 Hb_009535_020--Hb_028487_110 Hb_028639_010 Hb_028639_010 Hb_009535_020--Hb_028639_010 Hb_004218_240 Hb_004218_240 Hb_009535_020--Hb_004218_240 Hb_000567_050 Hb_000567_050 Hb_009535_020--Hb_000567_050 Hb_004567_100 Hb_004567_100 Hb_004767_090--Hb_004567_100 Hb_000755_080 Hb_000755_080 Hb_004767_090--Hb_000755_080 Hb_005228_080 Hb_005228_080 Hb_004767_090--Hb_005228_080 Hb_017711_020 Hb_017711_020 Hb_004767_090--Hb_017711_020 Hb_005738_010 Hb_005738_010 Hb_004767_090--Hb_005738_010 Hb_000173_510 Hb_000173_510 Hb_000059_150--Hb_000173_510 Hb_000743_040 Hb_000743_040 Hb_000059_150--Hb_000743_040 Hb_002273_130 Hb_002273_130 Hb_000059_150--Hb_002273_130 Hb_000059_150--Hb_000600_070 Hb_010381_060 Hb_010381_060 Hb_000059_150--Hb_010381_060 Hb_004450_010 Hb_004450_010 Hb_000059_150--Hb_004450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.159 49.6348 44.129 50.9244 151.534 161.277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.3534 25.1773 82.2451 56.4594 42.7604

CAGE analysis