Hb_000343_280

Information

Type -
Description -
Location Contig343: 336989-340377
Sequence    

Annotation

kegg
ID pmum:103325800
description L-ascorbate oxidase-like
nr
ID KDP46885.1
description hypothetical protein JCGZ_24094 [Jatropha curcas]
swissprot
ID Q40588
description L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1
trembl
ID A0A067LPQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24094 PE=4 SV=1
Gene Ontology
ID GO:0005576
description l-ascorbate oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35861: 337761-338181
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000343_280 0.0 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
2 Hb_005306_040 0.0954159302 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_008111_020 0.1388389405 - - Receptor like protein 6, putative [Theobroma cacao]
4 Hb_100873_040 0.1409863861 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_000512_080 0.141528693 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_000059_290 0.1457000263 - - pterin-4-alpha-carbinolamine dehydratase, putative [Ricinus communis]
7 Hb_000408_010 0.1457717919 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
8 Hb_003752_130 0.1486130659 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
9 Hb_000223_050 0.154589488 - - PREDICTED: endochitinase A-like [Jatropha curcas]
10 Hb_000203_030 0.1622187113 - - -
11 Hb_079158_010 0.1635654078 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
12 Hb_002481_070 0.1662781655 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_047923_010 0.1663673041 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
14 Hb_000035_300 0.1726633609 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002157_180 0.1745854258 - - separase, putative [Ricinus communis]
16 Hb_015912_010 0.1750252493 - - cytochrome P450, putative [Ricinus communis]
17 Hb_001481_030 0.1756736652 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000720_110 0.177549642 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
19 Hb_000265_020 0.1784400901 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
20 Hb_001998_190 0.1820293817 transcription factor TF Family: CSD PREDICTED: uncharacterized protein LOC105636942 [Jatropha curcas]

Gene co-expression network

sample Hb_000343_280 Hb_000343_280 Hb_005306_040 Hb_005306_040 Hb_000343_280--Hb_005306_040 Hb_008111_020 Hb_008111_020 Hb_000343_280--Hb_008111_020 Hb_100873_040 Hb_100873_040 Hb_000343_280--Hb_100873_040 Hb_000512_080 Hb_000512_080 Hb_000343_280--Hb_000512_080 Hb_000059_290 Hb_000059_290 Hb_000343_280--Hb_000059_290 Hb_000408_010 Hb_000408_010 Hb_000343_280--Hb_000408_010 Hb_000720_110 Hb_000720_110 Hb_005306_040--Hb_000720_110 Hb_001481_030 Hb_001481_030 Hb_005306_040--Hb_001481_030 Hb_055147_010 Hb_055147_010 Hb_005306_040--Hb_055147_010 Hb_005306_040--Hb_100873_040 Hb_000692_180 Hb_000692_180 Hb_005306_040--Hb_000692_180 Hb_002157_180 Hb_002157_180 Hb_008111_020--Hb_002157_180 Hb_003752_130 Hb_003752_130 Hb_008111_020--Hb_003752_130 Hb_047923_010 Hb_047923_010 Hb_008111_020--Hb_047923_010 Hb_001652_050 Hb_001652_050 Hb_008111_020--Hb_001652_050 Hb_000613_270 Hb_000613_270 Hb_008111_020--Hb_000613_270 Hb_008111_020--Hb_000059_290 Hb_100873_040--Hb_000059_290 Hb_000203_030 Hb_000203_030 Hb_100873_040--Hb_000203_030 Hb_100873_040--Hb_000408_010 Hb_001998_190 Hb_001998_190 Hb_100873_040--Hb_001998_190 Hb_003636_010 Hb_003636_010 Hb_000512_080--Hb_003636_010 Hb_000223_050 Hb_000223_050 Hb_000512_080--Hb_000223_050 Hb_152718_010 Hb_152718_010 Hb_000512_080--Hb_152718_010 Hb_001514_100 Hb_001514_100 Hb_000512_080--Hb_001514_100 Hb_000265_020 Hb_000265_020 Hb_000512_080--Hb_000265_020 Hb_002085_070 Hb_002085_070 Hb_000512_080--Hb_002085_070 Hb_000059_290--Hb_000203_030 Hb_000059_290--Hb_000408_010 Hb_000059_290--Hb_001998_190 Hb_000059_290--Hb_047923_010 Hb_000408_010--Hb_001998_190 Hb_002481_070 Hb_002481_070 Hb_000408_010--Hb_002481_070 Hb_000408_010--Hb_000203_030 Hb_000507_010 Hb_000507_010 Hb_000408_010--Hb_000507_010 Hb_019952_010 Hb_019952_010 Hb_000408_010--Hb_019952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.23555 2.2529 0.18811 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.38933 0.127675

CAGE analysis