Hb_000345_030

Information

Type -
Description -
Location Contig345: 51060-69266
Sequence    

Annotation

kegg
ID rcu:RCOM_1433280
description Rubber elongation factor protein, putative
nr
ID AAP46159.1
description REF-like stress related protein 1 [Hevea brasiliensis]
swissprot
ID O82803
description Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1
trembl
ID Q6XNP4
description REF-like stress related protein 1 OS=Hevea brasiliensis GN=RLP1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35972: 61240-63083 , PASA_asmbl_35973: 61240-63027 , PASA_asmbl_35974: 68540-69349 , PASA_asmbl_35975: 68017-69334 , PASA_asmbl_35976: 67954-69349
cDNA
(Sanger)
(ID:Location)		 001_F01.ab1: 61431-62290 , 001_N21.ab1: 68017-69334 , 009_A02.ab1: 61431-62290 , 009_J08.ab1: 61431-62290 , 023_M05.ab1: 68102-69349 , 025_L03.ab1: 67954-69349 , 032_F04.ab1: 61614-63074 , 034_A12.ab1: 68620-69349 , 035_F07.ab1: 61343-61495 , 038_A07.ab1: 68020-69334 , 041_B02.ab1: 62624-63077 , 051_K14.ab1: 68042-69349

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_030 0.0 - - REF-like stress related protein 1 [Hevea brasiliensis]
2 Hb_000345_040 0.0946239718 rubber biosynthesis Gene Name: REF4 -
3 Hb_006132_060 0.0969554742 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
4 Hb_004077_030 0.1014158213 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
5 Hb_000419_040 0.1064796022 - - chorismate synthase [Hevea brasiliensis]
6 Hb_001584_300 0.1104459556 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
7 Hb_002685_090 0.1146810163 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
8 Hb_024505_040 0.1158306429 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
9 Hb_012522_030 0.1220326141 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_002387_060 0.1221724047 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002539_080 0.12550151 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
12 Hb_000085_250 0.1286252538 - - sodium/hydrogen exchanger, putative [Ricinus communis]
13 Hb_002352_010 0.1321037972 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
14 Hb_002735_060 0.1343299168 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
15 Hb_054865_130 0.1344612871 - - acyltransferase, putative [Ricinus communis]
16 Hb_009265_060 0.1353667213 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
17 Hb_010589_040 0.1361659088 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001677_110 0.13744737 - - Protein YIPF1, putative [Ricinus communis]
19 Hb_015934_020 0.1419596028 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
20 Hb_000041_070 0.143052246 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]

Gene co-expression network

sample Hb_000345_030 Hb_000345_030 Hb_000345_040 Hb_000345_040 Hb_000345_030--Hb_000345_040 Hb_006132_060 Hb_006132_060 Hb_000345_030--Hb_006132_060 Hb_004077_030 Hb_004077_030 Hb_000345_030--Hb_004077_030 Hb_000419_040 Hb_000419_040 Hb_000345_030--Hb_000419_040 Hb_001584_300 Hb_001584_300 Hb_000345_030--Hb_001584_300 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090 Hb_006831_010 Hb_006831_010 Hb_000345_040--Hb_006831_010 Hb_000345_040--Hb_006132_060 Hb_010174_120 Hb_010174_120 Hb_000345_040--Hb_010174_120 Hb_004659_120 Hb_004659_120 Hb_000345_040--Hb_004659_120 Hb_024505_040 Hb_024505_040 Hb_000345_040--Hb_024505_040 Hb_000787_070 Hb_000787_070 Hb_006132_060--Hb_000787_070 Hb_006132_060--Hb_024505_040 Hb_002387_060 Hb_002387_060 Hb_006132_060--Hb_002387_060 Hb_006132_060--Hb_001584_300 Hb_005016_130 Hb_005016_130 Hb_006132_060--Hb_005016_130 Hb_000012_230 Hb_000012_230 Hb_004077_030--Hb_000012_230 Hb_004077_030--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_004077_030--Hb_009265_060 Hb_012423_050 Hb_012423_050 Hb_004077_030--Hb_012423_050 Hb_002539_080 Hb_002539_080 Hb_004077_030--Hb_002539_080 Hb_012522_030 Hb_012522_030 Hb_000419_040--Hb_012522_030 Hb_002936_050 Hb_002936_050 Hb_000419_040--Hb_002936_050 Hb_000419_040--Hb_009265_060 Hb_001863_480 Hb_001863_480 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000085_250 Hb_000085_250 Hb_001584_300--Hb_000085_250 Hb_002660_160 Hb_002660_160 Hb_001584_300--Hb_002660_160 Hb_001677_110 Hb_001677_110 Hb_001584_300--Hb_001677_110 Hb_002352_010 Hb_002352_010 Hb_001584_300--Hb_002352_010 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_000041_070 Hb_000041_070 Hb_002685_090--Hb_000041_070 Hb_015934_020 Hb_015934_020 Hb_002685_090--Hb_015934_020 Hb_012725_110 Hb_012725_110 Hb_002685_090--Hb_012725_110 Hb_002685_090--Hb_002387_060 Hb_002685_090--Hb_002936_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
226.77 9.97343 5.95334 76.6508 178.863 181.802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
529.115 252.137 499.568 28.9536 16.204

CAGE analysis