Hb_000345_090

Information

Type -
Description -
Location Contig345: 112520-115566
Sequence    

Annotation

kegg
ID tcc:TCM_026649
description Cell cycle checkpoint control protein family isoform 1
nr
ID XP_007030994.1
description Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F373
description Cell cycle checkpoint control protein family isoform 5 OS=Theobroma cacao GN=TCM_026649 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_090 0.0 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
2 Hb_027556_050 0.0005011536 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
3 Hb_080359_020 0.0006657303 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
4 Hb_000724_010 0.0013698737 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
5 Hb_001031_100 0.0018856136 - - -
6 Hb_000705_320 0.0026895241 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
7 Hb_002596_100 0.0029387648 - - -
8 Hb_003687_050 0.0030769383 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000441_240 0.0036210469 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
10 Hb_001031_070 0.0038128967 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
11 Hb_071079_030 0.0042008382 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
12 Hb_000938_010 0.0054525761 - - polyprotein [Oryza australiensis]
13 Hb_005625_030 0.0057444592 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
14 Hb_070810_010 0.0059135581 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
15 Hb_159542_010 0.0079722447 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_000696_180 0.0094219652 - - cysteine protease, putative [Ricinus communis]
17 Hb_001048_120 0.0096198231 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_002671_070 0.0114569172 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
19 Hb_005946_130 0.0114569172 - - -
20 Hb_011444_050 0.0124238333 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_000345_090 Hb_000345_090 Hb_027556_050 Hb_027556_050 Hb_000345_090--Hb_027556_050 Hb_080359_020 Hb_080359_020 Hb_000345_090--Hb_080359_020 Hb_000724_010 Hb_000724_010 Hb_000345_090--Hb_000724_010 Hb_001031_100 Hb_001031_100 Hb_000345_090--Hb_001031_100 Hb_000705_320 Hb_000705_320 Hb_000345_090--Hb_000705_320 Hb_002596_100 Hb_002596_100 Hb_000345_090--Hb_002596_100 Hb_027556_050--Hb_080359_020 Hb_027556_050--Hb_000724_010 Hb_027556_050--Hb_001031_100 Hb_027556_050--Hb_002596_100 Hb_003687_050 Hb_003687_050 Hb_027556_050--Hb_003687_050 Hb_080359_020--Hb_000724_010 Hb_080359_020--Hb_001031_100 Hb_080359_020--Hb_002596_100 Hb_080359_020--Hb_003687_050 Hb_000724_010--Hb_001031_100 Hb_000724_010--Hb_002596_100 Hb_000724_010--Hb_003687_050 Hb_001031_100--Hb_002596_100 Hb_001031_100--Hb_003687_050 Hb_000441_240 Hb_000441_240 Hb_001031_100--Hb_000441_240 Hb_005625_030 Hb_005625_030 Hb_000705_320--Hb_005625_030 Hb_000705_320--Hb_027556_050 Hb_070810_010 Hb_070810_010 Hb_000705_320--Hb_070810_010 Hb_000705_320--Hb_080359_020 Hb_000705_320--Hb_000724_010 Hb_002596_100--Hb_003687_050 Hb_002596_100--Hb_000441_240 Hb_001031_070 Hb_001031_070 Hb_002596_100--Hb_001031_070 Hb_071079_030 Hb_071079_030 Hb_002596_100--Hb_071079_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0323814 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0318071 0

CAGE analysis