Hb_000345_110

Information

Type -
Description -
Location Contig345: 134413-136922
Sequence    

Annotation

kegg
ID rcu:RCOM_1433240
description chloroplast-targeted copper chaperone, putative
nr
ID XP_012089017.1
description PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
swissprot
ID Q94BT9
description Copper transport protein ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=1
trembl
ID A0A067JKX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23316 PE=4 SV=1
Gene Ontology
ID GO:0044699
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_110 0.0 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
2 Hb_001541_160 0.1575222646 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
3 Hb_013405_100 0.1663806158 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
4 Hb_004013_020 0.175036977 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
5 Hb_002004_010 0.1759951569 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
6 Hb_000753_120 0.1819737623 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_000975_370 0.183764706 transcription factor TF Family: MYB PREDICTED: transcription factor MYB59 isoform X1 [Jatropha curcas]
8 Hb_000087_100 0.1862348894 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
9 Hb_005271_180 0.1882616341 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
10 Hb_000567_240 0.1904431345 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A-like [Jatropha curcas]
11 Hb_065525_010 0.1914521687 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
12 Hb_006618_020 0.1931425769 - - Vacuolar-processing enzyme precursor [Ricinus communis]
13 Hb_001242_190 0.1941041291 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
14 Hb_000856_410 0.1946214438 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_002073_090 0.1965395574 - - PREDICTED: copper transporter 6-like [Jatropha curcas]
16 Hb_005155_010 0.197199148 - - amino acid transporter, putative [Ricinus communis]
17 Hb_011457_080 0.1979494667 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
18 Hb_006717_010 0.1988045499 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
19 Hb_027402_100 0.2015999853 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
20 Hb_002973_030 0.2019117735 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000345_110 Hb_000345_110 Hb_001541_160 Hb_001541_160 Hb_000345_110--Hb_001541_160 Hb_013405_100 Hb_013405_100 Hb_000345_110--Hb_013405_100 Hb_004013_020 Hb_004013_020 Hb_000345_110--Hb_004013_020 Hb_002004_010 Hb_002004_010 Hb_000345_110--Hb_002004_010 Hb_000753_120 Hb_000753_120 Hb_000345_110--Hb_000753_120 Hb_000975_370 Hb_000975_370 Hb_000345_110--Hb_000975_370 Hb_001541_160--Hb_002004_010 Hb_000836_210 Hb_000836_210 Hb_001541_160--Hb_000836_210 Hb_002849_110 Hb_002849_110 Hb_001541_160--Hb_002849_110 Hb_001541_160--Hb_000975_370 Hb_001541_160--Hb_004013_020 Hb_050847_030 Hb_050847_030 Hb_001541_160--Hb_050847_030 Hb_065525_010 Hb_065525_010 Hb_013405_100--Hb_065525_010 Hb_013405_100--Hb_002004_010 Hb_097634_010 Hb_097634_010 Hb_013405_100--Hb_097634_010 Hb_001318_140 Hb_001318_140 Hb_013405_100--Hb_001318_140 Hb_001619_160 Hb_001619_160 Hb_013405_100--Hb_001619_160 Hb_005271_180 Hb_005271_180 Hb_013405_100--Hb_005271_180 Hb_004013_020--Hb_000753_120 Hb_004013_020--Hb_000975_370 Hb_000836_600 Hb_000836_600 Hb_004013_020--Hb_000836_600 Hb_000230_470 Hb_000230_470 Hb_004013_020--Hb_000230_470 Hb_000065_090 Hb_000065_090 Hb_004013_020--Hb_000065_090 Hb_002973_030 Hb_002973_030 Hb_002004_010--Hb_002973_030 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002004_010--Hb_002849_110 Hb_000753_120--Hb_000230_470 Hb_002909_100 Hb_002909_100 Hb_000753_120--Hb_002909_100 Hb_005408_100 Hb_005408_100 Hb_000753_120--Hb_005408_100 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050 Hb_001948_090 Hb_001948_090 Hb_000753_120--Hb_001948_090 Hb_000975_370--Hb_000753_120 Hb_000975_370--Hb_000065_090 Hb_000975_370--Hb_002973_030 Hb_000975_370--Hb_002004_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.774652 16.0697 3.1127 6.94298 0.391256 0.218436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.897298 0.247024 1.56843 0.835426 10.029

CAGE analysis