Hb_000345_130

Information

Type -
Description -
Location Contig345: 148408-149434
Sequence    

Annotation

kegg
ID pmum:103344589
description histone H2A.1-like
nr
ID CDP19528.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q94F49
description Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1
trembl
ID A0A068VIM7
description Histone H2A OS=Coffea canephora GN=GSCOC_T00005157001 PE=3 SV=1
Gene Ontology
ID GO:0000786
description fusion protein of histone 2a and enhanced yellow fluorescence protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35988: 148428-149475 , PASA_asmbl_35989: 148428-148843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_130 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002007_280 0.1128676859 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
3 Hb_005162_130 0.1194007823 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
4 Hb_000349_230 0.1211933089 - - PREDICTED: protein TPX2 [Jatropha curcas]
5 Hb_010998_050 0.1306046896 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
6 Hb_000345_410 0.1308407667 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
7 Hb_036790_030 0.1486101848 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
8 Hb_008406_100 0.1530721202 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
9 Hb_114310_120 0.156375178 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
10 Hb_029510_130 0.1625523617 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
11 Hb_002307_020 0.1723802143 - - PREDICTED: histone H1-like [Jatropha curcas]
12 Hb_001507_080 0.1761212986 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
13 Hb_005504_040 0.1795581427 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001501_070 0.1834343028 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
15 Hb_002007_040 0.1846471546 - - unnamed protein product [Coffea canephora]
16 Hb_001780_080 0.187112574 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
17 Hb_038044_010 0.1874843655 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_000365_210 0.1899607924 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
19 Hb_000321_080 0.1901446235 - - histone H4 [Zea mays]
20 Hb_005725_150 0.1918862643 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_130 Hb_000345_130 Hb_002007_280 Hb_002007_280 Hb_000345_130--Hb_002007_280 Hb_005162_130 Hb_005162_130 Hb_000345_130--Hb_005162_130 Hb_000349_230 Hb_000349_230 Hb_000345_130--Hb_000349_230 Hb_010998_050 Hb_010998_050 Hb_000345_130--Hb_010998_050 Hb_000345_410 Hb_000345_410 Hb_000345_130--Hb_000345_410 Hb_036790_030 Hb_036790_030 Hb_000345_130--Hb_036790_030 Hb_002007_280--Hb_000345_410 Hb_002007_280--Hb_005162_130 Hb_008406_100 Hb_008406_100 Hb_002007_280--Hb_008406_100 Hb_002007_280--Hb_000349_230 Hb_029510_130 Hb_029510_130 Hb_002007_280--Hb_029510_130 Hb_005162_130--Hb_000345_410 Hb_005162_130--Hb_008406_100 Hb_005162_130--Hb_000349_230 Hb_005162_130--Hb_010998_050 Hb_000349_230--Hb_010998_050 Hb_000349_230--Hb_000345_410 Hb_000349_230--Hb_029510_130 Hb_010998_050--Hb_036790_030 Hb_010998_050--Hb_000345_410 Hb_010998_050--Hb_002007_280 Hb_000345_410--Hb_008406_100 Hb_000321_080 Hb_000321_080 Hb_000345_410--Hb_000321_080 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_000739_270 Hb_000739_270 Hb_036790_030--Hb_000739_270 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_036790_030--Hb_000349_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7223 9.23017 400.198 116.318 50.5388 21.617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.76 23.8484 19.0719 29.8588 15.2751

CAGE analysis