Hb_000345_140

Information

Type -
Description -
Location Contig345: 150584-153082
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02670g
description hypothetical protein
nr
ID XP_012089025.1
description PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
swissprot
ID Q93VB2
description Autophagy-related protein 18a OS=Arabidopsis thaliana GN=ATG18A PE=1 SV=1
trembl
ID A0A067JU14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23323 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35990: 150580-153062 , PASA_asmbl_35991: 153926-158577
cDNA
(Sanger)
(ID:Location)		 001_F04.ab1: 152255-153062 , 008_C22.ab1: 152408-153062

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_140 0.0 - - PREDICTED: autophagy-related protein 18a-like [Jatropha curcas]
2 Hb_003785_040 0.0694016417 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
3 Hb_000441_070 0.0702375657 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
4 Hb_002043_140 0.0716630466 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
5 Hb_128743_010 0.0731435405 - - RNA-binding protein, putative [Ricinus communis]
6 Hb_006420_040 0.0749969843 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
7 Hb_000395_130 0.0760632229 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
8 Hb_008103_060 0.0761035458 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
9 Hb_012779_090 0.0763214146 - - PREDICTED: lipase member N [Jatropha curcas]
10 Hb_004195_200 0.0777737938 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
11 Hb_002636_180 0.0781884912 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
12 Hb_000976_210 0.0802435072 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
13 Hb_000796_030 0.0802964217 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
14 Hb_002890_090 0.0804033489 - - Auxin response factor 1 [Glycine soja]
15 Hb_001550_060 0.0810342795 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
16 Hb_162275_050 0.0818878039 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
17 Hb_023226_080 0.0826644983 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
18 Hb_000330_040 0.0827446454 - - PREDICTED: protein RER1B-like [Jatropha curcas]
19 Hb_000046_010 0.0828016413 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
20 Hb_002872_040 0.0841941519 - - pumilio, putative [Ricinus communis]

Gene co-expression network

sample Hb_000345_140 Hb_000345_140 Hb_003785_040 Hb_003785_040 Hb_000345_140--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000345_140--Hb_000441_070 Hb_002043_140 Hb_002043_140 Hb_000345_140--Hb_002043_140 Hb_128743_010 Hb_128743_010 Hb_000345_140--Hb_128743_010 Hb_006420_040 Hb_006420_040 Hb_000345_140--Hb_006420_040 Hb_000395_130 Hb_000395_130 Hb_000345_140--Hb_000395_130 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_000046_010 Hb_000046_010 Hb_000441_070--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000441_070--Hb_001718_090 Hb_000322_150 Hb_000322_150 Hb_000441_070--Hb_000322_150 Hb_004480_040 Hb_004480_040 Hb_000441_070--Hb_004480_040 Hb_076693_020 Hb_076693_020 Hb_000441_070--Hb_076693_020 Hb_000169_130 Hb_000169_130 Hb_000441_070--Hb_000169_130 Hb_000976_210 Hb_000976_210 Hb_002043_140--Hb_000976_210 Hb_011491_010 Hb_011491_010 Hb_002043_140--Hb_011491_010 Hb_002006_040 Hb_002006_040 Hb_002043_140--Hb_002006_040 Hb_008103_060 Hb_008103_060 Hb_002043_140--Hb_008103_060 Hb_007163_120 Hb_007163_120 Hb_002043_140--Hb_007163_120 Hb_009615_170 Hb_009615_170 Hb_002043_140--Hb_009615_170 Hb_004108_100 Hb_004108_100 Hb_128743_010--Hb_004108_100 Hb_000025_320 Hb_000025_320 Hb_128743_010--Hb_000025_320 Hb_144831_010 Hb_144831_010 Hb_128743_010--Hb_144831_010 Hb_000960_100 Hb_000960_100 Hb_128743_010--Hb_000960_100 Hb_000661_200 Hb_000661_200 Hb_128743_010--Hb_000661_200 Hb_001959_020 Hb_001959_020 Hb_128743_010--Hb_001959_020 Hb_001550_060 Hb_001550_060 Hb_006420_040--Hb_001550_060 Hb_000441_120 Hb_000441_120 Hb_006420_040--Hb_000441_120 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_006420_040--Hb_000025_320 Hb_003206_130 Hb_003206_130 Hb_006420_040--Hb_003206_130 Hb_006420_040--Hb_009503_030 Hb_000395_130--Hb_000092_020 Hb_001080_230 Hb_001080_230 Hb_000395_130--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000395_130--Hb_000003_190 Hb_000395_130--Hb_000441_120 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.383 32.1412 13.1667 11.4924 30.0471 18.2723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6994 15.5317 18.4142 19.7792 12.9268

CAGE analysis