Hb_000345_180

Information

Type -
Description -
Location Contig345: 188436-188723
Sequence    

Annotation

kegg
ID rcu:RCOM_1432600
description hypothetical protein
nr
ID XP_002512410.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF91
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1432600 PE=4 SV=1
Gene Ontology
ID GO:0044425
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35997: 189603-193225
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003159_060 0.0918725919 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
3 Hb_001301_140 0.1095344303 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_000365_150 0.174197705 - - GTP binding protein, putative [Ricinus communis]
5 Hb_001898_170 0.2005944576 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007943_170 0.2008731077 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
7 Hb_001514_170 0.2059321992 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
8 Hb_007617_040 0.214901522 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
9 Hb_115832_010 0.2159845785 - - transcription factor, putative [Ricinus communis]
10 Hb_033312_100 0.2283017167 - - -
11 Hb_002766_070 0.2283859791 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
12 Hb_002025_280 0.229266842 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
13 Hb_001488_080 0.2313784424 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_027445_070 0.2377542014 - - PREDICTED: denticleless protein homolog [Jatropha curcas]
15 Hb_000531_010 0.237894868 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
16 Hb_001258_070 0.2380371133 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005306_060 0.238308942 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
18 Hb_128392_010 0.2383783615 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
19 Hb_012016_050 0.2384349362 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
20 Hb_000422_040 0.2395746606 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]

Gene co-expression network

sample Hb_000345_180 Hb_000345_180 Hb_003159_060 Hb_003159_060 Hb_000345_180--Hb_003159_060 Hb_001301_140 Hb_001301_140 Hb_000345_180--Hb_001301_140 Hb_000365_150 Hb_000365_150 Hb_000345_180--Hb_000365_150 Hb_001898_170 Hb_001898_170 Hb_000345_180--Hb_001898_170 Hb_007943_170 Hb_007943_170 Hb_000345_180--Hb_007943_170 Hb_001514_170 Hb_001514_170 Hb_000345_180--Hb_001514_170 Hb_003159_060--Hb_001898_170 Hb_001258_070 Hb_001258_070 Hb_003159_060--Hb_001258_070 Hb_003159_060--Hb_001301_140 Hb_003159_060--Hb_000365_150 Hb_003159_060--Hb_001514_170 Hb_001301_140--Hb_007943_170 Hb_001488_080 Hb_001488_080 Hb_001301_140--Hb_001488_080 Hb_001301_140--Hb_000365_150 Hb_007558_110 Hb_007558_110 Hb_001301_140--Hb_007558_110 Hb_000365_150--Hb_007943_170 Hb_000438_030 Hb_000438_030 Hb_000365_150--Hb_000438_030 Hb_147060_010 Hb_147060_010 Hb_000365_150--Hb_147060_010 Hb_001898_170--Hb_001258_070 Hb_001898_170--Hb_000365_150 Hb_001898_170--Hb_001301_140 Hb_183671_010 Hb_183671_010 Hb_001898_170--Hb_183671_010 Hb_007943_170--Hb_001488_080 Hb_007943_170--Hb_007558_110 Hb_000621_100 Hb_000621_100 Hb_007943_170--Hb_000621_100 Hb_006120_140 Hb_006120_140 Hb_007943_170--Hb_006120_140 Hb_005332_030 Hb_005332_030 Hb_001514_170--Hb_005332_030 Hb_001699_270 Hb_001699_270 Hb_001514_170--Hb_001699_270 Hb_002686_320 Hb_002686_320 Hb_001514_170--Hb_002686_320 Hb_004055_090 Hb_004055_090 Hb_001514_170--Hb_004055_090 Hb_000522_160 Hb_000522_160 Hb_001514_170--Hb_000522_160 Hb_000977_190 Hb_000977_190 Hb_001514_170--Hb_000977_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175987 0 0.779251 0.700224 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.152738 0

CAGE analysis