Hb_000345_190

Information

Type transcription factor
Description TF Family: C2H2
Location Contig345: 189633-193241
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02730g
description hypothetical protein
nr
ID XP_002307119.2
description hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
swissprot
ID Q9SCQ6
description Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1
trembl
ID B9H586
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s02730g PE=4 SV=2
Gene Ontology
ID GO:0003676
description zinc finger protein nutcracker-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35997: 189603-193225
cDNA
(Sanger)
(ID:Location)		 034_O07.ab1: 191625-193225

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_190 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
2 Hb_000532_060 0.080354124 - - copper-transporting atpase p-type, putative [Ricinus communis]
3 Hb_046117_050 0.0909095261 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
4 Hb_000170_230 0.1042290974 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
5 Hb_135811_020 0.1071900504 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
6 Hb_106969_010 0.1075397232 - - Cytochrome P450 76C4 [Glycine soja]
7 Hb_005396_100 0.1143669049 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003376_340 0.1146526786 - - conserved hypothetical protein [Ricinus communis]
9 Hb_150643_010 0.1196117091 - - lipid binding protein, putative [Ricinus communis]
10 Hb_000333_130 0.1199438938 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_001013_010 0.1204398528 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000940_020 0.1241991753 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
13 Hb_001487_020 0.1244049184 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
14 Hb_001363_010 0.1248544524 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
15 Hb_005054_300 0.1252465865 - - aquaporin [Hevea brasiliensis]
16 Hb_047690_010 0.1266788372 - - Phosphoprotein phosphatase [Theobroma cacao]
17 Hb_012268_010 0.1271097215 - - glutamic acid-rich protein [Manihot esculenta]
18 Hb_000535_030 0.1282759902 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
19 Hb_004586_380 0.1305426658 - - purine transporter, putative [Ricinus communis]
20 Hb_002219_090 0.1337213816 - - protein kinase atmrk1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000345_190 Hb_000345_190 Hb_000532_060 Hb_000532_060 Hb_000345_190--Hb_000532_060 Hb_046117_050 Hb_046117_050 Hb_000345_190--Hb_046117_050 Hb_000170_230 Hb_000170_230 Hb_000345_190--Hb_000170_230 Hb_135811_020 Hb_135811_020 Hb_000345_190--Hb_135811_020 Hb_106969_010 Hb_106969_010 Hb_000345_190--Hb_106969_010 Hb_005396_100 Hb_005396_100 Hb_000345_190--Hb_005396_100 Hb_000532_060--Hb_000170_230 Hb_000532_060--Hb_046117_050 Hb_003376_340 Hb_003376_340 Hb_000532_060--Hb_003376_340 Hb_150643_010 Hb_150643_010 Hb_000532_060--Hb_150643_010 Hb_001487_020 Hb_001487_020 Hb_000532_060--Hb_001487_020 Hb_046117_050--Hb_000170_230 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_003376_340 Hb_005081_080 Hb_005081_080 Hb_046117_050--Hb_005081_080 Hb_001691_190 Hb_001691_190 Hb_000170_230--Hb_001691_190 Hb_000170_230--Hb_001487_020 Hb_000170_230--Hb_005081_080 Hb_047690_010 Hb_047690_010 Hb_135811_020--Hb_047690_010 Hb_135811_020--Hb_150643_010 Hb_135811_020--Hb_001487_020 Hb_003253_060 Hb_003253_060 Hb_135811_020--Hb_003253_060 Hb_135811_020--Hb_046117_050 Hb_000535_030 Hb_000535_030 Hb_135811_020--Hb_000535_030 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_118777_010 Hb_118777_010 Hb_106969_010--Hb_118777_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_003117_060 Hb_003117_060 Hb_106969_010--Hb_003117_060 Hb_001363_010 Hb_001363_010 Hb_005396_100--Hb_001363_010 Hb_000977_160 Hb_000977_160 Hb_005396_100--Hb_000977_160 Hb_000233_060 Hb_000233_060 Hb_005396_100--Hb_000233_060 Hb_007785_020 Hb_007785_020 Hb_005396_100--Hb_007785_020 Hb_002067_110 Hb_002067_110 Hb_005396_100--Hb_002067_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0952744 78.0545 1.37838 7.02982 0.210342 0.0669625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.032462 28.0863 1.08541

CAGE analysis