Hb_000345_200

Information

Type -
Description -
Location Contig345: 207084-210349
Sequence    

Annotation

kegg
ID rcu:RCOM_1432470
description hypothetical protein
nr
ID XP_012089035.1
description PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RF88
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1432470 PE=4 SV=1
Gene Ontology
ID GO:0005488
description arginine-glutamic acid dipeptide repeats

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_200 0.0 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
2 Hb_126380_010 0.0939963404 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
3 Hb_001205_030 0.1230703881 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
4 Hb_000732_250 0.1359484296 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
5 Hb_189208_020 0.1450422958 - - LRX2, putative [Ricinus communis]
6 Hb_001894_050 0.1585083974 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
7 Hb_001794_060 0.1671170967 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001564_080 0.1680363478 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
9 Hb_000649_240 0.1703301999 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
10 Hb_002097_200 0.1706529308 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
11 Hb_000451_070 0.1750051694 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_003078_050 0.1771311164 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
13 Hb_001153_180 0.1789642911 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
14 Hb_000432_040 0.1818571441 - - PREDICTED: remorin-like [Jatropha curcas]
15 Hb_001369_570 0.1820770274 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
16 Hb_034688_020 0.1832188868 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
17 Hb_001268_390 0.1841297454 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
18 Hb_008511_100 0.1848074067 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
19 Hb_000634_070 0.1851937964 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
20 Hb_000925_160 0.1883851865 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000345_200 Hb_000345_200 Hb_126380_010 Hb_126380_010 Hb_000345_200--Hb_126380_010 Hb_001205_030 Hb_001205_030 Hb_000345_200--Hb_001205_030 Hb_000732_250 Hb_000732_250 Hb_000345_200--Hb_000732_250 Hb_189208_020 Hb_189208_020 Hb_000345_200--Hb_189208_020 Hb_001894_050 Hb_001894_050 Hb_000345_200--Hb_001894_050 Hb_001794_060 Hb_001794_060 Hb_000345_200--Hb_001794_060 Hb_126380_010--Hb_001794_060 Hb_126380_010--Hb_001205_030 Hb_008511_100 Hb_008511_100 Hb_126380_010--Hb_008511_100 Hb_126380_010--Hb_189208_020 Hb_002097_200 Hb_002097_200 Hb_126380_010--Hb_002097_200 Hb_010921_030 Hb_010921_030 Hb_001205_030--Hb_010921_030 Hb_000925_160 Hb_000925_160 Hb_001205_030--Hb_000925_160 Hb_003078_050 Hb_003078_050 Hb_001205_030--Hb_003078_050 Hb_001205_030--Hb_189208_020 Hb_000987_060 Hb_000987_060 Hb_000732_250--Hb_000987_060 Hb_034688_020 Hb_034688_020 Hb_000732_250--Hb_034688_020 Hb_001189_140 Hb_001189_140 Hb_000732_250--Hb_001189_140 Hb_001825_060 Hb_001825_060 Hb_000732_250--Hb_001825_060 Hb_001856_200 Hb_001856_200 Hb_000732_250--Hb_001856_200 Hb_189208_020--Hb_002097_200 Hb_189208_020--Hb_001894_050 Hb_003175_030 Hb_003175_030 Hb_189208_020--Hb_003175_030 Hb_005725_210 Hb_005725_210 Hb_189208_020--Hb_005725_210 Hb_006788_140 Hb_006788_140 Hb_189208_020--Hb_006788_140 Hb_001564_080 Hb_001564_080 Hb_189208_020--Hb_001564_080 Hb_001817_160 Hb_001817_160 Hb_001894_050--Hb_001817_160 Hb_001894_050--Hb_001564_080 Hb_000451_070 Hb_000451_070 Hb_001894_050--Hb_000451_070 Hb_000915_160 Hb_000915_160 Hb_001894_050--Hb_000915_160 Hb_002042_130 Hb_002042_130 Hb_001894_050--Hb_002042_130 Hb_002572_050 Hb_002572_050 Hb_001794_060--Hb_002572_050 Hb_001369_570 Hb_001369_570 Hb_001794_060--Hb_001369_570 Hb_001794_060--Hb_008511_100 Hb_001944_020 Hb_001944_020 Hb_001794_060--Hb_001944_020 Hb_001433_140 Hb_001433_140 Hb_001794_060--Hb_001433_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.33181 1.97189 0.11805 0.354352 0.228673 0.295185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01839 0.669819 0.663037 0.450806 0.382486

CAGE analysis