Hb_000345_210

Information

Type -
Description -
Location Contig345: 214687-216084
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02010g
description POPTRDRAFT_240658; hypothetical protein
nr
ID XP_012089036.1
description PREDICTED: uncharacterized protein LOC105647523 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23332 PE=4 SV=1
Gene Ontology
ID GO:0008168
description PREDICTED: uncharacterized protein LOC105647523

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_210 0.0 - - PREDICTED: uncharacterized protein LOC105647523 [Jatropha curcas]
2 Hb_000883_030 0.2119013845 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
3 Hb_004738_110 0.2329912449 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
4 Hb_019516_030 0.2373867907 - - Calcyclin-binding protein, putative [Ricinus communis]
5 Hb_001369_370 0.2422307987 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
6 Hb_001390_010 0.2448814932 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
7 Hb_001427_030 0.2500753382 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006052_030 0.2541265794 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
9 Hb_000816_100 0.2558310723 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_048141_020 0.2563868534 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
11 Hb_022250_170 0.2567600307 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Populus euphratica]
12 Hb_002495_060 0.2591217312 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000363_460 0.2593489024 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_001089_060 0.26148319 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
15 Hb_002053_110 0.2645332971 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000016_130 0.2651767207 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
17 Hb_000330_080 0.2664102849 - - auxilin, putative [Ricinus communis]
18 Hb_003175_110 0.2695381368 - - -
19 Hb_000613_010 0.2700908421 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
20 Hb_011931_060 0.2712132635 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]

Gene co-expression network

sample Hb_000345_210 Hb_000345_210 Hb_000883_030 Hb_000883_030 Hb_000345_210--Hb_000883_030 Hb_004738_110 Hb_004738_110 Hb_000345_210--Hb_004738_110 Hb_019516_030 Hb_019516_030 Hb_000345_210--Hb_019516_030 Hb_001369_370 Hb_001369_370 Hb_000345_210--Hb_001369_370 Hb_001390_010 Hb_001390_010 Hb_000345_210--Hb_001390_010 Hb_001427_030 Hb_001427_030 Hb_000345_210--Hb_001427_030 Hb_004117_100 Hb_004117_100 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210 Hb_143629_060 Hb_143629_060 Hb_004738_110--Hb_143629_060 Hb_005288_110 Hb_005288_110 Hb_004738_110--Hb_005288_110 Hb_006052_030 Hb_006052_030 Hb_004738_110--Hb_006052_030 Hb_048141_030 Hb_048141_030 Hb_004738_110--Hb_048141_030 Hb_003058_020 Hb_003058_020 Hb_004738_110--Hb_003058_020 Hb_002053_110 Hb_002053_110 Hb_004738_110--Hb_002053_110 Hb_019516_030--Hb_001369_370 Hb_000454_190 Hb_000454_190 Hb_019516_030--Hb_000454_190 Hb_000062_110 Hb_000062_110 Hb_019516_030--Hb_000062_110 Hb_000941_140 Hb_000941_140 Hb_019516_030--Hb_000941_140 Hb_011004_020 Hb_011004_020 Hb_019516_030--Hb_011004_020 Hb_004635_080 Hb_004635_080 Hb_019516_030--Hb_004635_080 Hb_001369_370--Hb_000062_110 Hb_001369_370--Hb_011004_020 Hb_001369_370--Hb_000941_140 Hb_001235_100 Hb_001235_100 Hb_001369_370--Hb_001235_100 Hb_001369_370--Hb_000454_190 Hb_030627_040 Hb_030627_040 Hb_001390_010--Hb_030627_040 Hb_000037_110 Hb_000037_110 Hb_001390_010--Hb_000037_110 Hb_005527_030 Hb_005527_030 Hb_001390_010--Hb_005527_030 Hb_000749_110 Hb_000749_110 Hb_001390_010--Hb_000749_110 Hb_000207_190 Hb_000207_190 Hb_001390_010--Hb_000207_190 Hb_001390_010--Hb_004635_080 Hb_010137_060 Hb_010137_060 Hb_001427_030--Hb_010137_060 Hb_000016_130 Hb_000016_130 Hb_001427_030--Hb_000016_130 Hb_000130_260 Hb_000130_260 Hb_001427_030--Hb_000130_260 Hb_003663_060 Hb_003663_060 Hb_001427_030--Hb_003663_060 Hb_007922_020 Hb_007922_020 Hb_001427_030--Hb_007922_020 Hb_012506_060 Hb_012506_060 Hb_001427_030--Hb_012506_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111292 0.02463 0.0338205 0.11392 0.287158 0.119406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0799631 0.0998739 0.0426006 0.333545

CAGE analysis