Hb_000345_250

Information

Type -
Description -
Location Contig345: 235122-237953
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02800g
description hypothetical protein
nr
ID AFM82472.1
description cullin 1-like protein [Hevea brasiliensis]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID K9LNU3
description Cullin 1-like protein OS=Hevea brasiliensis GN=CUL2 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36003: 235126-238121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_250 0.0 - - cullin 1-like protein [Hevea brasiliensis]
2 Hb_000031_260 0.120736752 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
3 Hb_000286_060 0.1291467777 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
4 Hb_028487_170 0.1528758419 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
5 Hb_003291_020 0.1564135219 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
6 Hb_000700_040 0.1584898937 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
7 Hb_000685_050 0.1601262843 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
8 Hb_005137_060 0.1618745069 - - -
9 Hb_004931_100 0.1671460487 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
10 Hb_004897_010 0.1671498093 - - -
11 Hb_010560_050 0.1705286065 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
12 Hb_007054_010 0.1708949021 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
13 Hb_005307_050 0.1718597989 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
14 Hb_104265_040 0.1724441991 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003126_070 0.1726121702 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
16 Hb_001332_040 0.1744286207 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
17 Hb_004128_110 0.175670849 - - glutathione S-transferase L3-like [Jatropha curcas]
18 Hb_000252_110 0.1758782639 - - -
19 Hb_004672_010 0.1760930565 - - ecotropic viral integration site, putative [Ricinus communis]
20 Hb_001054_100 0.1765813851 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_250 Hb_000345_250 Hb_000031_260 Hb_000031_260 Hb_000345_250--Hb_000031_260 Hb_000286_060 Hb_000286_060 Hb_000345_250--Hb_000286_060 Hb_028487_170 Hb_028487_170 Hb_000345_250--Hb_028487_170 Hb_003291_020 Hb_003291_020 Hb_000345_250--Hb_003291_020 Hb_000700_040 Hb_000700_040 Hb_000345_250--Hb_000700_040 Hb_000685_050 Hb_000685_050 Hb_000345_250--Hb_000685_050 Hb_000031_260--Hb_000286_060 Hb_000227_070 Hb_000227_070 Hb_000031_260--Hb_000227_070 Hb_001369_250 Hb_001369_250 Hb_000031_260--Hb_001369_250 Hb_010174_150 Hb_010174_150 Hb_000031_260--Hb_010174_150 Hb_003038_140 Hb_003038_140 Hb_000031_260--Hb_003038_140 Hb_010560_050 Hb_010560_050 Hb_000286_060--Hb_010560_050 Hb_001085_240 Hb_001085_240 Hb_000286_060--Hb_001085_240 Hb_001332_040 Hb_001332_040 Hb_000286_060--Hb_001332_040 Hb_000286_060--Hb_000227_070 Hb_003633_050 Hb_003633_050 Hb_000286_060--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_000286_060--Hb_000096_160 Hb_005285_030 Hb_005285_030 Hb_028487_170--Hb_005285_030 Hb_028487_170--Hb_000286_060 Hb_000300_430 Hb_000300_430 Hb_028487_170--Hb_000300_430 Hb_001123_160 Hb_001123_160 Hb_028487_170--Hb_001123_160 Hb_028487_170--Hb_000700_040 Hb_004453_080 Hb_004453_080 Hb_028487_170--Hb_004453_080 Hb_148209_010 Hb_148209_010 Hb_003291_020--Hb_148209_010 Hb_003291_020--Hb_001123_160 Hb_000056_250 Hb_000056_250 Hb_003291_020--Hb_000056_250 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_011344_190 Hb_011344_190 Hb_000700_040--Hb_011344_190 Hb_000700_040--Hb_010560_050 Hb_000649_140 Hb_000649_140 Hb_000700_040--Hb_000649_140 Hb_002631_010 Hb_002631_010 Hb_000700_040--Hb_002631_010 Hb_003376_250 Hb_003376_250 Hb_000700_040--Hb_003376_250 Hb_000700_040--Hb_003126_070 Hb_007054_010 Hb_007054_010 Hb_000685_050--Hb_007054_010 Hb_000574_130 Hb_000574_130 Hb_000685_050--Hb_000574_130 Hb_130719_010 Hb_130719_010 Hb_000685_050--Hb_130719_010 Hb_000072_180 Hb_000072_180 Hb_000685_050--Hb_000072_180 Hb_000685_050--Hb_003291_020 Hb_006420_100 Hb_006420_100 Hb_000685_050--Hb_006420_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.813034 1.40456 1.74113 7.80757 1.00312 2.05274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.793 7.8858 6.27423 11.0266 4.47991

CAGE analysis