Hb_000345_260

Information

Type -
Description -
Location Contig345: 240299-241363
Sequence    

Annotation

kegg
ID cit:102630602
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like
nr
ID XP_006490030.1
description PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
swissprot
ID Q9LZM4
description Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1
trembl
ID A0A0D2QFS6
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G049400 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_260 0.0 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
2 Hb_000987_100 0.1455359773 - - unknown [Populus trichocarpa x Populus deltoides]
3 Hb_000230_480 0.1621323799 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
4 Hb_002107_090 0.1775825724 transcription factor TF Family: bZIP Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
5 Hb_004117_190 0.1781627487 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
6 Hb_001195_640 0.1789061757 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
7 Hb_002411_060 0.1848129159 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
8 Hb_000186_300 0.1900069618 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
9 Hb_000442_040 0.1914008558 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
10 Hb_002235_380 0.1972981107 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
11 Hb_002218_100 0.1977214684 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
12 Hb_000211_100 0.1986082403 - - PREDICTED: biotin synthase [Jatropha curcas]
13 Hb_160256_010 0.2007485858 - - -
14 Hb_000684_120 0.2016079694 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
15 Hb_101146_010 0.202288053 - - PREDICTED: peregrin-like [Jatropha curcas]
16 Hb_001196_040 0.2024643366 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
17 Hb_009411_040 0.2030729053 - - -
18 Hb_000123_140 0.2040655127 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
19 Hb_008375_030 0.2040762538 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
20 Hb_009771_060 0.2058333517 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_000345_260 Hb_000345_260 Hb_000987_100 Hb_000987_100 Hb_000345_260--Hb_000987_100 Hb_000230_480 Hb_000230_480 Hb_000345_260--Hb_000230_480 Hb_002107_090 Hb_002107_090 Hb_000345_260--Hb_002107_090 Hb_004117_190 Hb_004117_190 Hb_000345_260--Hb_004117_190 Hb_001195_640 Hb_001195_640 Hb_000345_260--Hb_001195_640 Hb_002411_060 Hb_002411_060 Hb_000345_260--Hb_002411_060 Hb_001198_130 Hb_001198_130 Hb_000987_100--Hb_001198_130 Hb_082655_010 Hb_082655_010 Hb_000987_100--Hb_082655_010 Hb_001168_070 Hb_001168_070 Hb_000987_100--Hb_001168_070 Hb_002045_090 Hb_002045_090 Hb_000987_100--Hb_002045_090 Hb_000442_040 Hb_000442_040 Hb_000987_100--Hb_000442_040 Hb_007894_210 Hb_007894_210 Hb_000230_480--Hb_007894_210 Hb_000062_360 Hb_000062_360 Hb_000230_480--Hb_000062_360 Hb_001322_020 Hb_001322_020 Hb_000230_480--Hb_001322_020 Hb_011386_050 Hb_011386_050 Hb_000230_480--Hb_011386_050 Hb_000364_100 Hb_000364_100 Hb_000230_480--Hb_000364_100 Hb_002218_100 Hb_002218_100 Hb_002107_090--Hb_002218_100 Hb_002107_090--Hb_000987_100 Hb_000123_140 Hb_000123_140 Hb_002107_090--Hb_000123_140 Hb_005194_040 Hb_005194_040 Hb_002107_090--Hb_005194_040 Hb_009411_040 Hb_009411_040 Hb_002107_090--Hb_009411_040 Hb_000580_100 Hb_000580_100 Hb_004117_190--Hb_000580_100 Hb_007741_130 Hb_007741_130 Hb_004117_190--Hb_007741_130 Hb_005054_220 Hb_005054_220 Hb_004117_190--Hb_005054_220 Hb_101146_010 Hb_101146_010 Hb_004117_190--Hb_101146_010 Hb_003540_050 Hb_003540_050 Hb_004117_190--Hb_003540_050 Hb_001268_340 Hb_001268_340 Hb_004117_190--Hb_001268_340 Hb_160256_010 Hb_160256_010 Hb_001195_640--Hb_160256_010 Hb_001195_640--Hb_001268_340 Hb_001053_190 Hb_001053_190 Hb_001195_640--Hb_001053_190 Hb_001195_640--Hb_003540_050 Hb_006816_100 Hb_006816_100 Hb_001195_640--Hb_006816_100 Hb_010812_070 Hb_010812_070 Hb_001195_640--Hb_010812_070 Hb_000684_120 Hb_000684_120 Hb_002411_060--Hb_000684_120 Hb_004162_230 Hb_004162_230 Hb_002411_060--Hb_004162_230 Hb_004449_040 Hb_004449_040 Hb_002411_060--Hb_004449_040 Hb_002837_050 Hb_002837_050 Hb_002411_060--Hb_002837_050 Hb_002411_060--Hb_004117_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86092 4.75256 19.3267 7.51281 1.09795 2.11827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.93876 2.72866 0.476989 2.41355 4.24267

CAGE analysis