Hb_000345_320

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig345: 267409-280906
Sequence    

Annotation

kegg
ID rcu:RCOM_1431990
description always early, putative
nr
ID XP_012089048.1
description PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q6A333
description Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1
trembl
ID A0A067JU30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23338 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein always early 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36007: 267461-269705 , PASA_asmbl_36008: 269909-271330 , PASA_asmbl_36009: 271937-275807 , PASA_asmbl_36010: 276130-279169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_320 0.0 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
2 Hb_002276_040 0.098049778 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
3 Hb_082741_010 0.1010458928 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
4 Hb_000209_100 0.1018799616 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
5 Hb_006916_110 0.1022177377 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
6 Hb_010872_050 0.1023623199 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
7 Hb_000144_120 0.1040694606 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_028960_030 0.1050426903 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
9 Hb_001396_010 0.1072265953 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
10 Hb_027760_060 0.1093821961 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_107298_010 0.1120258541 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
12 Hb_000205_250 0.1136562517 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
13 Hb_000317_350 0.1141048996 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
14 Hb_011925_020 0.1143723589 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_003636_080 0.1143989656 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
16 Hb_005074_020 0.1159738641 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
17 Hb_000331_510 0.1163210992 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]
18 Hb_006501_160 0.116489956 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
19 Hb_000979_220 0.1165517533 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
20 Hb_000258_090 0.1169459075 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_320 Hb_000345_320 Hb_002276_040 Hb_002276_040 Hb_000345_320--Hb_002276_040 Hb_082741_010 Hb_082741_010 Hb_000345_320--Hb_082741_010 Hb_000209_100 Hb_000209_100 Hb_000345_320--Hb_000209_100 Hb_006916_110 Hb_006916_110 Hb_000345_320--Hb_006916_110 Hb_010872_050 Hb_010872_050 Hb_000345_320--Hb_010872_050 Hb_000144_120 Hb_000144_120 Hb_000345_320--Hb_000144_120 Hb_002686_140 Hb_002686_140 Hb_002276_040--Hb_002686_140 Hb_005074_020 Hb_005074_020 Hb_002276_040--Hb_005074_020 Hb_000080_110 Hb_000080_110 Hb_002276_040--Hb_000080_110 Hb_009615_160 Hb_009615_160 Hb_002276_040--Hb_009615_160 Hb_011883_020 Hb_011883_020 Hb_002276_040--Hb_011883_020 Hb_001329_200 Hb_001329_200 Hb_002276_040--Hb_001329_200 Hb_082741_010--Hb_006916_110 Hb_012760_040 Hb_012760_040 Hb_082741_010--Hb_012760_040 Hb_042474_010 Hb_042474_010 Hb_082741_010--Hb_042474_010 Hb_000347_450 Hb_000347_450 Hb_082741_010--Hb_000347_450 Hb_082741_010--Hb_000209_100 Hb_001642_070 Hb_001642_070 Hb_000209_100--Hb_001642_070 Hb_000209_100--Hb_006916_110 Hb_000535_050 Hb_000535_050 Hb_000209_100--Hb_000535_050 Hb_011925_020 Hb_011925_020 Hb_000209_100--Hb_011925_020 Hb_000209_100--Hb_005074_020 Hb_016347_010 Hb_016347_010 Hb_000209_100--Hb_016347_010 Hb_012325_010 Hb_012325_010 Hb_006916_110--Hb_012325_010 Hb_006916_110--Hb_042474_010 Hb_021576_010 Hb_021576_010 Hb_006916_110--Hb_021576_010 Hb_000342_050 Hb_000342_050 Hb_006916_110--Hb_000342_050 Hb_000190_090 Hb_000190_090 Hb_006916_110--Hb_000190_090 Hb_016734_020 Hb_016734_020 Hb_010872_050--Hb_016734_020 Hb_007185_040 Hb_007185_040 Hb_010872_050--Hb_007185_040 Hb_011674_040 Hb_011674_040 Hb_010872_050--Hb_011674_040 Hb_010872_050--Hb_006916_110 Hb_000979_220 Hb_000979_220 Hb_010872_050--Hb_000979_220 Hb_007441_280 Hb_007441_280 Hb_000144_120--Hb_007441_280 Hb_000144_120--Hb_012760_040 Hb_001004_140 Hb_001004_140 Hb_000144_120--Hb_001004_140 Hb_000327_250 Hb_000327_250 Hb_000144_120--Hb_000327_250 Hb_001900_100 Hb_001900_100 Hb_000144_120--Hb_001900_100 Hb_001221_020 Hb_001221_020 Hb_000144_120--Hb_001221_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75867 5.24564 5.28508 3.99961 1.07492 1.3408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6335 1.97993 2.34318 8.00236 3.56486

CAGE analysis