Hb_000345_360

Information

Type -
Description -
Location Contig345: 321007-329513
Sequence    

Annotation

kegg
ID rcu:RCOM_1431640
description hypothetical protein
nr
ID XP_012089056.1
description PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
swissprot
ID Q9FZ33
description Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=2 SV=1
trembl
ID A0A067JHT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23344 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein auxin response 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36023: 323691-323990 , PASA_asmbl_36024: 325320-329128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_360 0.0 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
2 Hb_004875_030 0.0458306753 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
3 Hb_000990_090 0.0507834266 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
4 Hb_004223_290 0.0587521378 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
5 Hb_009529_030 0.0757542943 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
6 Hb_002391_290 0.0763341962 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
7 Hb_041828_010 0.0803296017 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
8 Hb_000004_030 0.0862313123 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
9 Hb_001486_070 0.0863476494 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
10 Hb_000261_100 0.0873289036 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
11 Hb_004659_020 0.0877950854 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
12 Hb_000362_150 0.0894901684 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
13 Hb_000780_190 0.0911063087 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
14 Hb_000785_040 0.0942555525 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
15 Hb_001948_130 0.0953256533 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
16 Hb_017295_010 0.0958966998 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
17 Hb_008484_010 0.096173949 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
18 Hb_002273_120 0.0983767957 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
19 Hb_000035_410 0.098770536 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
20 Hb_005731_090 0.0988192759 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_360 Hb_000345_360 Hb_004875_030 Hb_004875_030 Hb_000345_360--Hb_004875_030 Hb_000990_090 Hb_000990_090 Hb_000345_360--Hb_000990_090 Hb_004223_290 Hb_004223_290 Hb_000345_360--Hb_004223_290 Hb_009529_030 Hb_009529_030 Hb_000345_360--Hb_009529_030 Hb_002391_290 Hb_002391_290 Hb_000345_360--Hb_002391_290 Hb_041828_010 Hb_041828_010 Hb_000345_360--Hb_041828_010 Hb_004875_030--Hb_004223_290 Hb_004875_030--Hb_000990_090 Hb_002044_050 Hb_002044_050 Hb_004875_030--Hb_002044_050 Hb_001486_070 Hb_001486_070 Hb_004875_030--Hb_001486_070 Hb_004875_030--Hb_009529_030 Hb_000990_090--Hb_002391_290 Hb_000990_090--Hb_009529_030 Hb_000785_040 Hb_000785_040 Hb_000990_090--Hb_000785_040 Hb_004545_090 Hb_004545_090 Hb_000990_090--Hb_004545_090 Hb_000035_410 Hb_000035_410 Hb_004223_290--Hb_000035_410 Hb_004223_290--Hb_002044_050 Hb_004223_290--Hb_000785_040 Hb_004223_290--Hb_041828_010 Hb_002273_120 Hb_002273_120 Hb_009529_030--Hb_002273_120 Hb_017295_010 Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_001862_140 Hb_001862_140 Hb_002391_290--Hb_001862_140 Hb_000004_030 Hb_000004_030 Hb_002391_290--Hb_000004_030 Hb_000110_190 Hb_000110_190 Hb_002391_290--Hb_000110_190 Hb_001677_080 Hb_001677_080 Hb_002391_290--Hb_001677_080 Hb_008484_010 Hb_008484_010 Hb_041828_010--Hb_008484_010 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_000347_560 Hb_000347_560 Hb_041828_010--Hb_000347_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6579 16.1425 9.9247 29.6248 27.763 32.2799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2723 6.52217 10.3127 21.1291 20.003

CAGE analysis