Hb_000345_390

Information

Type -
Description -
Location Contig345: 344800-347274
Sequence    

Annotation

kegg
ID rcu:RCOM_1431500
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP23516.1
description hypothetical protein JCGZ_23349 [Jatropha curcas]
swissprot
ID Q5LWJ5
description Chaperone protein DnaJ OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=dnaJ PE=3 SV=1
trembl
ID A0A067JHU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23349 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36031: 345667-346844 , PASA_asmbl_36032: 344781-345825 , PASA_asmbl_36033: 345036-345596
cDNA
(Sanger)
(ID:Location)		 039_G07.ab1: 344781-345825

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_390 0.0 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
2 Hb_001053_180 0.100452774 - - protein binding protein, putative [Ricinus communis]
3 Hb_116349_100 0.1018680903 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
4 Hb_003683_120 0.1022384451 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000127_010 0.1031393509 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
6 Hb_024682_010 0.1033139566 - - sterol isomerase, putative [Ricinus communis]
7 Hb_003020_020 0.1036248272 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
8 Hb_002963_020 0.1069140548 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001959_070 0.1077166742 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
10 Hb_004934_110 0.1102701035 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
11 Hb_000505_010 0.1119985717 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
12 Hb_003607_050 0.1140712047 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
13 Hb_101832_010 0.1170448688 - - nitrate transporter, putative [Ricinus communis]
14 Hb_000840_030 0.1246264214 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
15 Hb_000887_020 0.1265892116 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
16 Hb_004048_110 0.12927029 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
17 Hb_000236_070 0.1298908691 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011316_040 0.1299862592 - - peptidase, putative [Ricinus communis]
19 Hb_000096_090 0.1311364935 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
20 Hb_138585_050 0.1314566208 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]

Gene co-expression network

sample Hb_000345_390 Hb_000345_390 Hb_001053_180 Hb_001053_180 Hb_000345_390--Hb_001053_180 Hb_116349_100 Hb_116349_100 Hb_000345_390--Hb_116349_100 Hb_003683_120 Hb_003683_120 Hb_000345_390--Hb_003683_120 Hb_000127_010 Hb_000127_010 Hb_000345_390--Hb_000127_010 Hb_024682_010 Hb_024682_010 Hb_000345_390--Hb_024682_010 Hb_003020_020 Hb_003020_020 Hb_000345_390--Hb_003020_020 Hb_001053_180--Hb_024682_010 Hb_000096_090 Hb_000096_090 Hb_001053_180--Hb_000096_090 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_001053_180--Hb_116349_100 Hb_116349_100--Hb_003020_020 Hb_000505_010 Hb_000505_010 Hb_116349_100--Hb_000505_010 Hb_001959_070 Hb_001959_070 Hb_116349_100--Hb_001959_070 Hb_116349_100--Hb_000096_090 Hb_001427_200 Hb_001427_200 Hb_003683_120--Hb_001427_200 Hb_026549_040 Hb_026549_040 Hb_003683_120--Hb_026549_040 Hb_004934_110 Hb_004934_110 Hb_003683_120--Hb_004934_110 Hb_001292_020 Hb_001292_020 Hb_003683_120--Hb_001292_020 Hb_001246_060 Hb_001246_060 Hb_003683_120--Hb_001246_060 Hb_028486_030 Hb_028486_030 Hb_003683_120--Hb_028486_030 Hb_000127_010--Hb_024682_010 Hb_000887_020 Hb_000887_020 Hb_000127_010--Hb_000887_020 Hb_008175_040 Hb_008175_040 Hb_000127_010--Hb_008175_040 Hb_000251_070 Hb_000251_070 Hb_000127_010--Hb_000251_070 Hb_000454_050 Hb_000454_050 Hb_000127_010--Hb_000454_050 Hb_024682_010--Hb_000887_020 Hb_012725_050 Hb_012725_050 Hb_024682_010--Hb_012725_050 Hb_024682_010--Hb_000454_050 Hb_001157_020 Hb_001157_020 Hb_024682_010--Hb_001157_020 Hb_001328_040 Hb_001328_040 Hb_024682_010--Hb_001328_040 Hb_000768_170 Hb_000768_170 Hb_003020_020--Hb_000768_170 Hb_111985_050 Hb_111985_050 Hb_003020_020--Hb_111985_050 Hb_112798_030 Hb_112798_030 Hb_003020_020--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_003020_020--Hb_005186_050 Hb_003020_020--Hb_000251_070 Hb_000347_540 Hb_000347_540 Hb_003020_020--Hb_000347_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.366 2.01983 5.90789 5.81096 9.52792 9.82993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0174 18.0356 11.6974 2.03145 11.1571

CAGE analysis