Hb_000345_410

Information

Type -
Description -
Location Contig345: 354888-359745
Sequence    

Annotation

kegg
ID rcu:RCOM_1431480
description Kinesin-3, putative
nr
ID XP_012089062.1
description PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
swissprot
ID O81635
description Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2
trembl
ID A0A067JL11
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_23351 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kifc3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36036: 354910-355213 , PASA_asmbl_36037: 355564-359722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_410 0.0 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
2 Hb_002007_280 0.0619705858 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
3 Hb_005162_130 0.068029296 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
4 Hb_008406_100 0.1157856073 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
5 Hb_000321_080 0.1224302137 - - histone H4 [Zea mays]
6 Hb_010998_050 0.1256828049 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
7 Hb_000345_130 0.1308407667 - - unnamed protein product [Coffea canephora]
8 Hb_000349_230 0.1445154428 - - PREDICTED: protein TPX2 [Jatropha curcas]
9 Hb_005901_030 0.1477074887 - - PREDICTED: phragmoplast orienting kinesin 2 isoform X1 [Jatropha curcas]
10 Hb_000638_260 0.1483972351 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
11 Hb_029510_130 0.153415837 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
12 Hb_000288_090 0.1552544703 - - unnamed protein product [Vitis vinifera]
13 Hb_000640_050 0.162580082 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
14 Hb_000260_650 0.1639019177 - - PREDICTED: protein PFC0760c [Jatropha curcas]
15 Hb_001501_070 0.1684316115 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
16 Hb_000365_210 0.1731038239 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
17 Hb_024973_020 0.1733460562 - - Protein regulator of cytokinesis, putative [Ricinus communis]
18 Hb_000347_140 0.1741769527 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_003430_040 0.1792104255 - - spermidine synthase 1, putative [Ricinus communis]
20 Hb_011360_130 0.1794834052 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000345_410 Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_000345_410--Hb_002007_280 Hb_005162_130 Hb_005162_130 Hb_000345_410--Hb_005162_130 Hb_008406_100 Hb_008406_100 Hb_000345_410--Hb_008406_100 Hb_000321_080 Hb_000321_080 Hb_000345_410--Hb_000321_080 Hb_010998_050 Hb_010998_050 Hb_000345_410--Hb_010998_050 Hb_000345_130 Hb_000345_130 Hb_000345_410--Hb_000345_130 Hb_002007_280--Hb_005162_130 Hb_002007_280--Hb_000345_130 Hb_002007_280--Hb_008406_100 Hb_000349_230 Hb_000349_230 Hb_002007_280--Hb_000349_230 Hb_029510_130 Hb_029510_130 Hb_002007_280--Hb_029510_130 Hb_005162_130--Hb_008406_100 Hb_005162_130--Hb_000345_130 Hb_005162_130--Hb_000349_230 Hb_005162_130--Hb_010998_050 Hb_024973_020 Hb_024973_020 Hb_008406_100--Hb_024973_020 Hb_000365_210 Hb_000365_210 Hb_008406_100--Hb_000365_210 Hb_001501_070 Hb_001501_070 Hb_008406_100--Hb_001501_070 Hb_000321_080--Hb_002007_280 Hb_044662_050 Hb_044662_050 Hb_000321_080--Hb_044662_050 Hb_000321_080--Hb_005162_130 Hb_002007_040 Hb_002007_040 Hb_000321_080--Hb_002007_040 Hb_000321_080--Hb_008406_100 Hb_036790_030 Hb_036790_030 Hb_010998_050--Hb_036790_030 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_000349_230 Hb_010998_050--Hb_000345_130 Hb_000345_130--Hb_000349_230 Hb_000345_130--Hb_036790_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39625 0.956993 20.5241 5.52128 1.68639 0.958287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13211 0.955413 1.05981 1.7116 0.68712

CAGE analysis