Hb_000345_430

Information

Type -
Description -
Location Contig345: 361310-364019
Sequence    

Annotation

kegg
ID pmum:103318569
description 40S ribosomal protein S24-1
nr
ID ADR71266.1
description 40S ribosomal protein S24A [Hevea brasiliensis]
swissprot
ID Q8LC83
description 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2
trembl
ID I3NMM9
description 40S ribosomal protein S24 OS=Hevea brasiliensis GN=RPS24A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s24-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_430 0.0 - - 40S ribosomal protein S24A [Hevea brasiliensis]
2 Hb_009659_020 0.1146881148 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
3 Hb_015978_070 0.1226671884 - - -
4 Hb_129204_010 0.1338007111 - - LOC100284182 [Zea mays]
5 Hb_012305_120 0.1392298256 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
6 Hb_007520_060 0.1400215657 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
7 Hb_001587_060 0.14055167 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006541_020 0.1555711763 - - unknown [Lotus japonicus]
9 Hb_001575_030 0.1563374978 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
10 Hb_030954_020 0.1598555818 - - hypothetical protein RCOM_1330200 [Ricinus communis]
11 Hb_080477_060 0.1644316187 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000419_130 0.1701533782 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
13 Hb_001610_130 0.1728066784 - - 40S ribosomal protein S30 [Medicago truncatula]
14 Hb_021924_010 0.175154454 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
15 Hb_000367_030 0.1800437675 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
16 Hb_003226_220 0.1877541064 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
17 Hb_001623_430 0.1879343197 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
18 Hb_000025_240 0.1907375897 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
19 Hb_008887_040 0.1920040521 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
20 Hb_000091_100 0.1923868893 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_430 Hb_000345_430 Hb_009659_020 Hb_009659_020 Hb_000345_430--Hb_009659_020 Hb_015978_070 Hb_015978_070 Hb_000345_430--Hb_015978_070 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_012305_120 Hb_012305_120 Hb_000345_430--Hb_012305_120 Hb_007520_060 Hb_007520_060 Hb_000345_430--Hb_007520_060 Hb_001587_060 Hb_001587_060 Hb_000345_430--Hb_001587_060 Hb_030954_020 Hb_030954_020 Hb_009659_020--Hb_030954_020 Hb_009659_020--Hb_007520_060 Hb_080477_060 Hb_080477_060 Hb_009659_020--Hb_080477_060 Hb_001623_430 Hb_001623_430 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_001575_030 Hb_001575_030 Hb_015978_070--Hb_001575_030 Hb_001610_130 Hb_001610_130 Hb_015978_070--Hb_001610_130 Hb_015978_070--Hb_012305_120 Hb_000419_130 Hb_000419_130 Hb_015978_070--Hb_000419_130 Hb_129204_010--Hb_001575_030 Hb_129204_010--Hb_015978_070 Hb_006541_020 Hb_006541_020 Hb_129204_010--Hb_006541_020 Hb_129204_010--Hb_001587_060 Hb_129204_010--Hb_001610_130 Hb_000847_140 Hb_000847_140 Hb_012305_120--Hb_000847_140 Hb_012305_120--Hb_001623_430 Hb_012305_120--Hb_007520_060 Hb_012305_120--Hb_009659_020 Hb_007520_060--Hb_006541_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_006718_010 Hb_006718_010 Hb_007520_060--Hb_006718_010 Hb_000367_210 Hb_000367_210 Hb_007520_060--Hb_000367_210 Hb_007520_060--Hb_000419_130 Hb_000009_040 Hb_000009_040 Hb_001587_060--Hb_000009_040 Hb_001587_060--Hb_009659_020 Hb_000236_460 Hb_000236_460 Hb_001587_060--Hb_000236_460 Hb_001587_060--Hb_030565_040 Hb_001587_060--Hb_007520_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30409 0.150242 0.306748 3.73192 0.456469 8.14921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8992 21.3708 2.65379 1.63459 0.511495

CAGE analysis